Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1849 ATGGGAAGGCACTCTTGCTGCTACAAACAGAAGTTACGGAAAGGCCTCTGGTCTCCAGAGGAAGACGAGAAGCTTCTCAATTACATCAACAAACATGGCCATGGATGTTGGAGCTCGGTCCCCAAACTCGCTGGTTTGCAGAGGTGTGGGAAGAGCTGCAGGTTGAGGTGGATAAATTACCTGAGGCCTGATTTGAAGAGAGGAGCATTCTCACAGCAGGAAGAGAACATGATTATTGAACTCCATGCAGTCCTTGGAAACAGGTGGTCTCAGATTGCAGCACAGTTACCGGGAAGAACTGACAATGAGATTAAAAATCTATGGAACTCGTGCCTCAAGAAGAAGCTGAGGCAAAGAGGCATTGACCCAAACACCCACAAACCACTCTCTGAGGTTGAGAACGACAAGGACATGCCACCCTCAACCGACAAAAACAATCAGAAAGCCTCAGTGGGATCCAATGAAGTGAGTTTGGTTGATCAGCCAGCAAAACCCATGCCTTCAGAGAGATACCCTCTTGAAGTTTCCACTAGTTCCACCCAGGAACTATTCCTAGATAGGTTTGGTACTACCTGCCATGACAACAGTTGCAGACCCTCTGATGTGGTAGGATCATATTTCTCCTTCCAACAGTTGAACTATGGAACAAACATTGGCCTCTCTGAAAACCCCAACACCTCTCTTTGTTTCATTCCACCCTCCACTTCTTCAGACCTTCATAATTCTACCATAACCTCCTCTATGCTCCATTCAATTTTCCCAACACATGTGAAGCTCCAATCTAATAACAACCCCTCCATATCCTCTGATGGGGTTCAAAACTGGGAAGGCAGCAACTTCAGTAACAGcaacaacacaaacaaaaacaatggGAGCATCCAGTTACAAAGCAGCACAAACTTCCTTGACAACACGTGGGGGGTGGCAGAGTCCATGAAGGTTAACAAAGATGGTCAAGTGCCCCTACAAGCAGaacaagaagaaataaaatggtCTGAGTATCTGAACACCCCGTTTATTCTGGGAAACACTGCGCAGAGTCAAACCTCTCAATCTATCTACAGTGAGGTTAAACCTGAAACAGGATTCATAACAGACGAGTCATGTACTAGTTGGCACCATAGTCAGCAACACCCACCAGCTTTTCAACTTTCCGATATATATAACAAGGATCTGCAGAGATTTTCGGTGACTTTTGGACAAACCCTGTAA 1212 0.4439 MGRHSCCYKQKLRKGLWSPEEDEKLLNYINKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENMIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVENDKDMPPSTDKNNQKASVGSNEVSLVDQPAKPMPSERYPLEVSTSSTQELFLDRFGTTCHDNSCRPSDVVGSYFSFQQLNYGTNIGLSENPNTSLCFIPPSTSSDLHNSTITSSMLHSIFPTHVKLQSNNNPSISSDGVQNWEGSNFSNSNNTNKNNGSIQLQSSTNFLDNTWGVAESMKVNKDGQVPLQAEQEEIKWSEYLNTPFILGNTAQSQTSQSIYSEVKPETGFITDESCTSWHHSQQHPPAFQLSDIYNKDLQRFSVTFGQTL 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1849 403 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Ssu7g1849 403 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu7g1849 403 MobiDBLite consensus disorder prediction 119 142 - -
Ssu7g1849 403 MobiDBLite consensus disorder prediction 119 174 - -
Ssu7g1849 403 MobiDBLite consensus disorder prediction 275 294 - -
Ssu7g1849 403 CDD SANT 17 61 IPR001005 -
Ssu7g1849 403 PANTHER HOMEODOMAIN-RELATED 1 396 - -
Ssu7g1849 403 Gene3D - 11 67 - -
Ssu7g1849 403 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ssu7g1849 403 SMART sant 13 63 IPR001005 -
Ssu7g1849 403 SMART sant 66 114 IPR001005 -
Ssu7g1849 403 MobiDBLite consensus disorder prediction 143 157 - -
Ssu7g1849 403 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Ssu7g1849 403 PANTHER MYB DOMAIN PROTEIN 55 1 396 - -
Ssu7g1849 403 CDD SANT 69 109 IPR001005 -
Ssu7g1849 403 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ssu7g1849 403 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Ssu7g1849 403 Gene3D - 68 148 - -
Ssu7g1849 403 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1849 Ssu-Chr7 37252045 37253549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1849 1 403 MYB Transcription Factor Family AT1G09540 51.914 6.13e-121 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu7g1849 Myb_DNA-binding 6.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1849 K09422 - gmx:778072 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0510 4 8061122 8062593 Ssu7g1849 7 37252045 37253549 ECH
Ssu7g1849 7 37252045 37253549 Ssu4g0510 4 8061122 8062593 ECH
Ssu7g1849 7 37252045 37253549 Ssu7g1849 7 37252045 37253549 ECH
Ssu4g0480 4 7653911 7655482 Ssu7g1849 7 37252045 37253549 ECH
Ssu4g0480 4 7653911 7655482 Ssu7g1849 7 37252045 37253549 PCT