Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1846 ATGCCTTTATATGAGTTGTACCGGCTGGCTAGAGAGAAGCTTGGTAAAGAGACTAACAGCACACGTGCACCTGGTCAATGTTCCTCGCCTGAGAATGATTTTTTTGAGCTAGTTTGGGAGAATGGTCAGATTTCGAGCCAGGGTCAGTCCAGTAGAGTTAGAAGGAGCCCATCTTGCAAGAGTTTACCATCTCACTGCTTACCATCTCACAGTCCCAAGGGTAGAGATAAAGATGTAGGATATGGTGCCAACACAAGGATGGGAAAATTTTGGGATTTAGACTCTGGATTGAATGAAATTCAAATGTCAGTGCCATCCCGTGAAGTGGATTTCTGTCAAGATGAAGATGTGTTACCTTGGTTGGATTATACAACAATGGATGGTTCCTTGCAACATGACTATGATTCTGATTTCCTCCCTGCTTCAAATAGTTTTACtctattggataaaaaaagtaatggcAACATGGTATTTAGGGATTCTCATAAAACTGAAGAACAAGGGAATGTTTTCAAGGGTTCTTCAGCTGAACAGGTTGAGACTGCTAGACCTAAAGCTAGCACCAGTGAGTTATACCCCCCATCATTGCATCAATGTCAAACATCATTTGTATCTGCTAGATCCAGGGCATCGGATATAactgaaaataatatcacaagtAATGCAAACCAGGATGCGTCTTATGGCGAAATTACTCATATTCTATCTTCCTCAAGTGATTTTTCTAGCTTAAAGGTGCAGAAGCAAGATCTACCTATGCCTGGCAATGGTTCCAGTTCCACCATAATGAATTTCTCCCATTTTGCAAGGCCTGCTGCTATTGTAAGAGCTAATCTTCAGAACATTGGCCTGAAGTCTGGTGTGTCTTCAGCAAGATCAGACAGTatggaaattaagaataaaGGTGCTGCTGCAACTAGCAGCAGTCCTCCTGAGTCAATTCTTGTTGATTCAAGTAGTGAACGTTCAAAGGAACCCGCCATGCACTGCCAGCAGGTTGTAGAGCAATCCAAGGCTGATTTGAACTCTTTGCAGCCAAAATCTGTTGAACAGAATGCTGTGCCTTCTAAGCAGTCAGAGCCTGCTTGTAAAGAGAGTGCCACTAAGATTGATCAAACTCCCAATCAAGTTCTTGGTGACAGTGGTGCTAAAGGACAGACAGCTGCTGAAAAAGGTATGGAGCCAGCAGTAGCCTCTTCCTCTGTTTGCTCTGGCAATGGTACAGACAGAGGTTCAAACGAgccaaatcaaaatttgaagcgAAAAAGTAAAGACACTGAGGACTCCGAGTGCCATAGTGAGGATGTTGAGGAAGAATCAGTGGGTGTTAAAAAGACAGCTGGTGGGCGAACAGGTACAGGTTCCAAGAGAAGCCGTGCAGCTGAAGTGCATAATCTATCTGAAAGGAGGCGAAGAGACAGGATCAATGAGAAGATGCGTGCATTACAGGAACTCATACCAAATTGCAATAAGGTGGATAAAGCTTCAATGCTGGATGAGGCAATTGAGTACCTTAAAACACTTCAGCTCCAAGTTCAAATTATGTCAATGGGAGCTGGTTTATACATGCCTCCAATGATGTTACCTGCGGGAATGCAGCACATGCATGCACCACATATGGCACCATTTTCACCTATGGGTGTTGGCATGCATATGGGATTTGGTATGGGTTATGGGATGGGCATGCCTGACATGAATGGTGGATCTTCAAGATTCCCAATGATTCAGGTGCCCCAAATGCAAGGACCTCATATCCCTGTTGCACATATGTCTGGACCTACTGCTTTACATGGAATGGCCAGATCAAATCCTCCAGGGTTTGGGCTTCCTGGACAAGGACATCCCATGCCAATGCCACGAGTTcctgtttttcctttttcgGGAGGGCTTCTCATGAATTCACCAGGTCTGGGACTACATGCCTGTGGATCATCAGGACTTGTTGAAACTGTGGATTCAGCTTCCGCATCTGGCTTAAAGGATCAAATGCCAACTGCTGACCCTCAAGTTAAGCAAAGCACTTGTGGCTGTGACTCAACAAGTAAGATGCCTACCCAGTGTGAAGCAGCTGCTGTTGGATTTGAGCAATCTGCTTTTGTACATAATAGTGGTGGTCGTGCCTTCAAGCCTAATGACAATGCAGCTGTTAATCCTGGTCCTGGCAAAGAAGATAACCTTGTGATCGGTAAATCTTCTGAACATGTTATGAATGATAAGACCGTGCCTGAtggaagttttaaaaaatga 2247 0.425 MPLYELYRLAREKLGKETNSTRAPGQCSSPENDFFELVWENGQISSQGQSSRVRRSPSCKSLPSHCLPSHSPKGRDKDVGYGANTRMGKFWDLDSGLNEIQMSVPSREVDFCQDEDVLPWLDYTTMDGSLQHDYDSDFLPASNSFTLLDKKSNGNMVFRDSHKTEEQGNVFKGSSAEQVETARPKASTSELYPPSLHQCQTSFVSARSRASDITENNITSNANQDASYGEITHILSSSSDFSSLKVQKQDLPMPGNGSSSTIMNFSHFARPAAIVRANLQNIGLKSGVSSARSDSMEIKNKGAAATSSSPPESILVDSSSERSKEPAMHCQQVVEQSKADLNSLQPKSVEQNAVPSKQSEPACKESATKIDQTPNQVLGDSGAKGQTAAEKGMEPAVASSSVCSGNGTDRGSNEPNQNLKRKSKDTEDSECHSEDVEEESVGVKKTAGGRTGTGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGLYMPPMMLPAGMQHMHAPHMAPFSPMGVGMHMGFGMGYGMGMPDMNGGSSRFPMIQVPQMQGPHIPVAHMSGPTALHGMARSNPPGFGLPGQGHPMPMPRVPVFPFSGGLLMNSPGLGLHACGSSGLVETVDSASASGLKDQMPTADPQVKQSTCGCDSTSKMPTQCEAAAVGFEQSAFVHNSGGRAFKPNDNAAVNPGPGKEDNLVIGKSSEHVMNDKTVPDGSFKK 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1846 748 MobiDBLite consensus disorder prediction 415 444 - -
Ssu7g1846 748 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 459 508 IPR011598 GO:0046983
Ssu7g1846 748 PANTHER TRANSCRIPTION FACTOR PIF3 1 683 IPR044273 GO:0003700|GO:0006355
Ssu7g1846 748 CDD bHLH_AtPIF_like 459 521 - -
Ssu7g1846 748 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 456 519 IPR036638 GO:0046983
Ssu7g1846 748 MobiDBLite consensus disorder prediction 335 382 - -
Ssu7g1846 748 Pfam Helix-loop-helix DNA-binding domain 463 509 IPR011598 GO:0046983
Ssu7g1846 748 SMART finulus 465 514 IPR011598 GO:0046983
Ssu7g1846 748 MobiDBLite consensus disorder prediction 399 414 - -
Ssu7g1846 748 PANTHER TRANSCRIPTION FACTOR PIF3 1 683 - -
Ssu7g1846 748 MobiDBLite consensus disorder prediction 708 748 - -
Ssu7g1846 748 Gene3D - 454 517 IPR036638 GO:0046983
Ssu7g1846 748 MobiDBLite consensus disorder prediction 45 65 - -
Ssu7g1846 748 MobiDBLite consensus disorder prediction 287 473 - -
Ssu7g1846 748 MobiDBLite consensus disorder prediction 287 317 - -
Ssu7g1846 748 MobiDBLite consensus disorder prediction 45 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1846 Ssu-Chr7 37204240 37207972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1846 1 588 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 38.358 8.66e-76 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu7g1846 HLH 8.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1846 K12126 - gmx:100794974 1211.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1846 7 37204240 37207972 Ssu7g1846 7 37204240 37207972 ECH