Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1844 ATGGCCGATGAGGGTAGAGCAACATGCATAGACATCCTCCTTGCCATCATCCTGCCTCCTCTTGGAGTTTTCCTCAAATATGGCTGCAAGGTGGAGTTCTGGATTTGTTTGGCGCTGACCATTTTGGGTTATATACCTGGAATTATCTATGCTGTCTATGCTATCACCAAGTGA 174 0.4598 MADEGRATCIDILLAIILPPLGVFLKYGCKVEFWICLALTILGYIPGIIYAVYAITK 57
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1844 57 PANTHER HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATED 3 57 IPR000612 GO:0016021
Ssu7g1844 57 ProSitePatterns Uncharacterized protein family UPF0057 signature. 13 28 IPR000612 GO:0016021
Ssu7g1844 57 PANTHER BNAC03G34420D PROTEIN 3 57 - -
Ssu7g1844 57 Pfam Proteolipid membrane potential modulator 9 55 IPR000612 GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1844 Ssu-Chr7 37178777 37179070 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1844 5 57 RCI2 Gene Family AT3G05890 73.585 4.10e-24 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1844 - - pda:103696736 105.145