Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1841 ATGACGAGGAAGAAAGTGAAACTTGCCTATATCTCCGATGCCACAGCAAGGAAATCCACgtacaagaaaaggaaaaagggtaTCATTAAGAAGGTGAGTGAACTCACCATTCTTTGCGGGATCCCAGCCTGTGCTATAATTTCCAGTCCTTTTGATTCTAAGCCAGAGGTTTGGCCAGATCTAGAGGGAGCTAGGCAAATGATTCAGAGATATCTGAATGCATCTGTGCTAGATCAAAGCAAGAACGTCAACCAAGAGAGCTTTATCATGCAAAGGATTGCCAAAGCCCGTGACCAGCTAAAGAAGCAGCATCAGGAGAATCGTGAAAAGGAGATGACCTTGTCCTTGTTCCAGTACATGGAAGGTAAAGACCTGCCAGATACCGTTGAAGAACTGAAAGAACTTGACAAGCTAATTGAGAAGAATATGAAGGAGATTGAAAATAAGTTGGCTGCGCTCACTTGTGAGTCTACTTAG 477 0.4172 MTRKKVKLAYISDATARKSTYKKRKKGIIKKVSELTILCGIPACAIISSPFDSKPEVWPDLEGARQMIQRYLNASVLDQSKNVNQESFIMQRIAKARDQLKKQHQENREKEMTLSLFQYMEGKDLPDTVEELKELDKLIEKNMKEIENKLAALTCEST 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1841 158 Coils Coil 90 113 - -
Ssu7g1841 158 Gene3D - 13 120 IPR036879 GO:0003677|GO:0046983
Ssu7g1841 158 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 153 - -
Ssu7g1841 158 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Ssu7g1841 158 Coils Coil 129 156 - -
Ssu7g1841 158 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ssu7g1841 158 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ssu7g1841 158 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 53 IPR002100 GO:0003677|GO:0046983
Ssu7g1841 158 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Ssu7g1841 158 PANTHER MADS BOX PROTEIN 2 153 - -
Ssu7g1841 158 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1841 Ssu-Chr7 37152999 37153475 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1841 1 153 MADS-box Gene Family AT5G26630 45.513 7.11e-38 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ssu7g1841 SRF-TF 5.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1841 - - gmx:100792290 234.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1841 7 37152999 37153475 Ssu7g1841 7 37152999 37153475 ECH