Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1840 ATGACTAGGAAGAAAGTGAAATTTGTCTTGATCTCTGATGACATGGCAAGGAAAGCCAcgtataagaaaaagaagaaggatcTCATCAAGAAGGTGAATGAACTCATCATTCTTTATGGGATCCCAGCTTGTGTTATAACTTCTAGTCCTTCTGATCCAAGGCCAAAGGTTTGGCCAAATCTAGAGGCAGCCAAGCAAATGATTCAAAGGTATTTGAATGCATTTGTGTTAGATGAAAACAAGAATGTTAACCAAGAGAGCTTCATCATGCAGAGGATTGCCAAAGCTCATGCCCAACTGAAGAAGTTGCATTGA 315 0.3714 MTRKKVKFVLISDDMARKATYKKKKKDLIKKVNELIILYGIPACVITSSPSDPRPKVWPNLEAAKQMIQRYLNAFVLDENKNVNQESFIMQRIAKAHAQLKKLH 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1840 104 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 103 - -
Ssu7g1840 104 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Ssu7g1840 104 SUPERFAMILY SRF-like 1 81 IPR036879 GO:0003677|GO:0046983
Ssu7g1840 104 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Ssu7g1840 104 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Ssu7g1840 104 PANTHER MADS BOX PROTEIN 2 103 - -
Ssu7g1840 104 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1840 Ssu-Chr7 37122119 37122433 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1840 3 103 Type I MADS-box Gene Family AT1G65300 41.176 3.13e-23 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ssu7g1840 SRF-TF 1.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1840 - - gmx:100792290 138.658