Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1828 ATGGGTGCTGATCTTAAAGCTGAACTGTCCGAGAAAACTCCTGTTTTTGGTCTTAAGGTTTGGGAAATAATTGGAATTGCGGTTGGATTGTTTATTATTGTCATCCTCTGTGGGCTCTCATTTTGCCTTACTTCAAGGAAGAAGTCAAGGAAAGCCAGGGACAGGATTCCTGCTAGTCATATACCTACTGTCTCAAAGGAAATCACGGAAGTGCGGGTTGAGCAAGTGCCGGCAAATGGATTTGTTCCTCGTGAAGGAATACTTCTCACAATTCATGATAAGACCAGTGACAAAGAATCAGACAAAGTCATGCTTCATTTAGGTGTTGGGAAGATGAAGCATGGGGATAGTGGCAGTCACTCGGATTCGTTTCATTACTTGGAGAAAGATGGAGGTGGGTCACAATCAGGGGAAGAAATTAGCTCTGGCACGGTTGGAGTGTACAATCCCTCTTCTTCATACCACCCCATAACAGCTCCTTCACCTCTCTCTGGCCTTCCAGAATTCTCTCACTTGGGTTGGGGTCACTGGTTTACACTGAGGGATCTTGAACATGCTACAAACcgtttttcaaaagaaaatgtaattggTGAGGGTGGGTATGGAGTTGTTTACCGGGGACAGTTGGTCAATGGGACTCCAGTGGCAGTTAAGAAGATACTCAATAACATTGGTCAAGCTGAGAAAGAATTTAGAGTGGAAGTTGAAGCTATTGGCCATGTCCGACATAAAAATTTGGTTCGGCTTTTGGGGTACTGCATTGAGGGGACTCATAGGATGTTAGTTTATGAGTATGTCAATAATGGAAACCTAGAGCAATGGCTTCATGGAGCTATGCGTCATCATGGATATCTTACCTGGGAAGCACGTATCAAGATTCTCCTTGGCACAGCTAAGGCGCTTGCATATTTGCATGAAGCGATTGAGCCAAAGGTGGTACACCGAGATATCAAGTCAAGCAACATATTAGTTGATGATGACTTTAATGCCAAGGTTTCTGATTTTGGCCTGGCCAAGTTACTGGGTTCTGGGAAGAGTCATGTTGCAACGCGAGTCATGGGAACCTTTGGATATGTGGCTCCTGAATATGCAAATACTGGTCTTCTAAATGAAAAAAGTGATGTTTATAGCTTTGGTGTTGTGCTATTGGAAGCAATTACTGGAAGAGATCCAGTAGACTATGGTCGTCCAGCACAGGAAGTTAATATGGTTGATTGGCTGAAGATGATGGTTGGAAACAGGCGATCAGAAGAAGTGGTGGACCCAAACATTGAGGTGAAACCATCAACCAGAGCTTTGAAACGGGCTCTCTTAACTGCTTTGAGATGTGTAGATCCAGATTCAGATAAAAGACCCAAGATGGGCCAAGTTGTGCGTATGCTAGAGTCAGAGGAGTACCCATTGCCAAGAGAGGACCGTAGGCATCGACGAAATCTTGGGGTTAACTCAGAAATTGAATCCCAGAAGGATTGTTCTGACACGGATGGCAGTGACATTCAGGGTTCTAGATCAGAAAGCGGAAGGTAA 1527 0.4381 MGADLKAELSEKTPVFGLKVWEIIGIAVGLFIIVILCGLSFCLTSRKKSRKARDRIPASHIPTVSKEITEVRVEQVPANGFVPREGILLTIHDKTSDKESDKVMLHLGVGKMKHGDSGSHSDSFHYLEKDGGGSQSGEEISSGTVGVYNPSSSYHPITAPSPLSGLPEFSHLGWGHWFTLRDLEHATNRFSKENVIGEGGYGVVYRGQLVNGTPVAVKKILNNIGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRMLVYEYVNNGNLEQWLHGAMRHHGYLTWEARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILVDDDFNAKVSDFGLAKLLGSGKSHVATRVMGTFGYVAPEYANTGLLNEKSDVYSFGVVLLEAITGRDPVDYGRPAQEVNMVDWLKMMVGNRRSEEVVDPNIEVKPSTRALKRALLTALRCVDPDSDKRPKMGQVVRMLESEEYPLPREDRRHRRNLGVNSEIESQKDCSDTDGSDIQGSRSESGR 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1828 508 Gene3D Transferase(Phosphotransferase) domain 1 266 476 - -
Ssu7g1828 508 SUPERFAMILY Protein kinase-like (PK-like) 174 470 IPR011009 -
Ssu7g1828 508 Gene3D Phosphorylase Kinase; domain 1 172 265 - -
Ssu7g1828 508 MobiDBLite consensus disorder prediction 464 493 - -
Ssu7g1828 508 CDD STKc_IRAK 196 462 - -
Ssu7g1828 508 MobiDBLite consensus disorder prediction 494 508 - -
Ssu7g1828 508 SMART serkin_6 190 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g1828 508 PANTHER OS01G0323000 PROTEIN 3 504 - -
Ssu7g1828 508 ProSiteProfiles Protein kinase domain profile. 190 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g1828 508 ProSitePatterns Protein kinases ATP-binding region signature. 196 219 IPR017441 GO:0005524
Ssu7g1828 508 Pfam Protein kinase domain 191 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g1828 508 MobiDBLite consensus disorder prediction 464 508 - -
Ssu7g1828 508 ProSitePatterns Serine/Threonine protein kinases active-site signature. 312 324 IPR008271 GO:0004672|GO:0006468
Ssu7g1828 508 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 3 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1828 Ssu-Chr7 36907378 36911520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1828 167 464 Trihelix Transcription Factor Family AT1G70460 50.495 4.92e-92 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Ssu7g1828 Pkinase 5.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1828 - - gmx:100778269 923.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1828 7 36907378 36911520 Ssu7g1828 7 36907378 36911520 ECH
Ssu7g1828 7 36907378 36911520 Ssu4g0467 4 7479809 7483617 PCT