Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1818 ATGGCCGTTGACGGGACCTATTCAGATTCAAAAACAGCGACAATTGTGACAAAGGATCTCAGATTTACGTACCCCGGCATCGACGGCCATCCCCCGCCGGGTTCCACTCCTCTCATTCAAGATTTGAATCTCGCTCTCTATTCCGGCGACCGCTGCCTTCTCGTCGGTTCCAACGGCGCCgGTAAGACCACTATCCTCAAGATACTAGGAGGGAAACACTTGGTGGAACCTGACATGGTTCGCGTGCTCGGAAGATCAGCTTTTCACGACACCACTTTAGTATCCTCTGGCGATCTCTGTTATCTCGGTGGAGAGtGGAGGCGAGATGTTGCTTTTGCAGGTTTTGAGGTTCCGATACAAATGGACGTTTCTGctgaaaaaatgatatttggTGTAGCTGGGATTGATCCTGAAAGAAGAGAAGAGCTAATCAAGGTATTAGATATAGATCTTTCCTGGAGATTGCATAAAGTATCAGATGGTCAAAGAAGAAGAGTGCAAATTTGTATGGGTCTCCTAAAACCATTCAAGGTTCTTCTTCTCGATGAGATAACAGTTGACCTTGATGTTCTAGCAAGAGCTGACCTTCTGAGATTTCTAAGAAAGGAATGTGAAGAGAGGGGTGCCACTATTATCTATGCAACACATATATTTGACGGTCTCGAGGATTGGCCAACCAATATTGTTTATGTAGCCCATGGAAAGCTGCAACTAGCAATGCCTATGGACAAAGTCAAAGAAATTAGCAAATCATCACTAATGAGAACAGTAGAAAGTTGGCTGCGGAAAGAACGAGatgaagatagaaagaaaaggaaagagagaaaagcaGCTGGTCTTCCTGAATTCGGAAAGCAAGTAGAGGGAAGCCGTGTAACAGGGGATCCAGCGCGTGCCGCAGTTAGAGTAATTAATAATGGCTGGGCAGCGGGACGATTAAATTCCACCGTTGCTGGTGAGGAAAACTTTCTCCTGAGCTCAAACCGAGTATTGAGGCAGTAG 1002 0.4391 MAVDGTYSDSKTATIVTKDLRFTYPGIDGHPPPGSTPLIQDLNLALYSGDRCLLVGSNGAGKTTILKILGGKHLVEPDMVRVLGRSAFHDTTLVSSGDLCYLGGEWRRDVAFAGFEVPIQMDVSAEKMIFGVAGIDPERREELIKVLDIDLSWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLEDWPTNIVYVAHGKLQLAMPMDKVKEISKSSLMRTVESWLRKERDEDRKKRKERKAAGLPEFGKQVEGSRVTGDPARAAVRVINNGWAAGRLNSTVAGEENFLLSSNRVLRQ 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1818 333 Pfam ABC transporter 40 185 IPR003439 GO:0005524
Ssu7g1818 333 PANTHER ATP-BINDING CASSETTE ABC TRANSPORTER-RELATED 13 332 - -
Ssu7g1818 333 SMART AAA_5 48 235 IPR003593 -
Ssu7g1818 333 Gene3D - 12 280 IPR027417 -
Ssu7g1818 333 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 15 258 IPR003439 GO:0005524
Ssu7g1818 333 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 251 IPR027417 -
Ssu7g1818 333 MobiDBLite consensus disorder prediction 264 281 - -
Ssu7g1818 333 PANTHER ABC TRANSPORTER I FAMILY MEMBER 20 13 332 - -
Ssu7g1818 333 MobiDBLite consensus disorder prediction 264 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1818 Ssu-Chr7 36755319 36759144 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1818 18 212 Calmodulin-binding Proteins AT2G36910 23.113 1.12e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1818 K12608 - gmx:100782386 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1818 7 36755319 36759144 Ssu7g1818 7 36755319 36759144 ECH