Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1804 ATGTCCGACAAGAAAGACAGAGAGCAGTACGGCGTGCTCCTCTATTACAAGTACGCTGAAATTCCCAACCTCAACGACCTGGTTAGCTTCTACCACTCCAACTGCTCCTCCCTCCGCCTCCTTGGTCGTGTTCGCCTTTCTTCCCACGGCGTCAATGTCACCGTTGGTGGCAACTTATCTTCTCTCGAGAGCCACATCGAGGCCCTCAAAGCCTACAACACCTTGTTTCACGCCACCGATTTCAAGCTCGCCACGTGTCATCACCCACTTAACGACAAAGTCGCCAAGGAGTGTGGATTCACCTCTCTCTCTATTCGGATCGTTGACGAACTTGTTACTCTCAGTTCCCATCCACTGTTAAAGTCACCACATATCTCCAATGCTGGAAAGCACCTCTCTGCACACGAGTTCCATTCTTCTCTTCATAATGCCAACAAGGAGAGTCCCGAAAACTGCCTTGTTTTACTCGATGCAAGGAATCTGTATGAAACAAGAATTGGGAAGTTTCATGTGCCAAATGTTGAAACTTTGGATCCACAAGTTAGGCAGTATAGTGATTTGTCTTCATGGATAGATGATAATGGTGAGcggttgaaaggaaaaaatatccTCATGTATTGTACTGGTGGAATCAGGTGTGAAATGGCATCAGCATATATTAGGTCAAAAGGTGCTGGGTTTGAGAATGTGTTTCAGTTATTTGGTGGCATACAACGGTATTTGGAGCAATTCTCAGATGGTGGGTTTTTCAAAGgaaagaattttgtttttgatcaCCGGATATCAGTTGGAAGTTCAGATGCTAATGTTATTGGTACCTGCCTTCTTTGTCAATGTTCATTTGATGATTACACTTCTCGCTGCCGGTGTACTTACTGCAGAATGCTTGTCTTGGTTTGTTCTAGTTGCCAGAGTGAATCTACACCGTATGTTTGTGAGCTATGTCAGAAACAGAGCAAGGCCGTCAGGTTGACACAGTTAATTGAAAATGGTGAATCAAAAACATTGTCAGGTGTTGAGGTCCAGAATTTTTCTTCAGATACTATGTGTTTGCCTCAAGTGCCTAGGGGAGATGGTAAGATCCAAGGACGTCAAGAAAATTGA 1104 0.4303 MSDKKDREQYGVLLYYKYAEIPNLNDLVSFYHSNCSSLRLLGRVRLSSHGVNVTVGGNLSSLESHIEALKAYNTLFHATDFKLATCHHPLNDKVAKECGFTSLSIRIVDELVTLSSHPLLKSPHISNAGKHLSAHEFHSSLHNANKESPENCLVLLDARNLYETRIGKFHVPNVETLDPQVRQYSDLSSWIDDNGERLKGKNILMYCTGGIRCEMASAYIRSKGAGFENVFQLFGGIQRYLEQFSDGGFFKGKNFVFDHRISVGSSDANVIGTCLLCQCSFDDYTSRCRCTYCRMLVLVCSSCQSESTPYVCELCQKQSKAVRLTQLIENGESKTLSGVEVQNFSSDTMCLPQVPRGDGKIQGRQEN 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1804 367 Gene3D - 1 112 - -
Ssu7g1804 367 Pfam UPF0176 acylphosphatase like domain 11 110 IPR040503 -
Ssu7g1804 367 SMART rhod_4 139 246 IPR001763 -
Ssu7g1804 367 SUPERFAMILY FYVE/PHD zinc finger 271 319 IPR011011 -
Ssu7g1804 367 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 3 336 - -
Ssu7g1804 367 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 3 336 IPR020936 -
Ssu7g1804 367 Pfam Rhodanase C-terminal 251 316 IPR022111 -
Ssu7g1804 367 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 123 263 IPR036873 -
Ssu7g1804 367 ProSiteProfiles Rhodanese domain profile. 153 245 IPR001763 -
Ssu7g1804 367 Gene3D - 121 277 IPR036873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1804 Ssu-Chr7 36619943 36623799 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1804 5 321 Sulfurtransferasese or Rhodanese AT1G09280 72.871 3.45e-171 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1804 - - gmx:100786152 649.432