Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1798 ATGGCGTCGTTCGATCCGAGCGTAGATTCAAAAGAAGCGCAGGAAATCGGAGACCAGGCCGTAGATCACAATTCCGTCAACGCCGTCCCGTGGAGATCCGAGGCGGAGCAGCGGATCTACTCGCGCCGGCTCGTGGAGGCTCTCCGGCGGACTCCGTCATCGGCGACCAAGCCTAGAGCCGCCGGCCAAGTCCGCGAGACCGCCGACCGAGTCCTCGCCACCACCGCGAGAGGCAGAACGCGGTGGAGCCGCGCGATCCTCGGCCGGTGGAGGAAGCTCCCGAGCCAGCACAAGAAGGTGAAGAAGGCATCATCCACCGCTGGATTGAAGAGAACGAGGATTGGCGGAGAGAGGAGGAACCGGTTACCGGCTGTGCAGAAGAAAGCGCGCGTTCTCAGCCGGTTGGTTCCCGGTTGCCGGAAGGTCTCGTTCCCGAACCTTCTGGAAGAAGCCACGGACTATATTTCCGCCCTGGAGATGCAAGTGCGAGCCATGACGGCTCTCGCCCAACTGCTCGCCGGCGGCGCGCCGGCTGGACTCGCCGGTGGCGGGTTGAGTTGA 561 0.6399 MASFDPSVDSKEAQEIGDQAVDHNSVNAVPWRSEAEQRIYSRRLVEALRRTPSSATKPRAAGQVRETADRVLATTARGRTRWSRAILGRWRKLPSQHKKVKKASSTAGLKRTRIGGERRNRLPAVQKKARVLSRLVPGCRKVSFPNLLEEATDYISALEMQVRAMTALAQLLAGGAPAGLAGGGLS 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1798 186 MobiDBLite consensus disorder prediction 1 24 - -
Ssu7g1798 186 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 109 158 IPR011598 GO:0046983
Ssu7g1798 186 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 10 185 IPR044660 GO:0006355
Ssu7g1798 186 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 119 174 IPR036638 GO:0046983
Ssu7g1798 186 PANTHER TRANSCRIPTION FACTOR BHLH150 10 185 - -
Ssu7g1798 186 CDD bHLH_AtIBH1_like 114 169 IPR044549 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1798 Ssu-Chr7 36529416 36530008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1798 6 165 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09250 47.674 3.30e-37 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1798 - - gmx:100783462 262.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1798 7 36529416 36530008 Ssu7g1798 7 36529416 36530008 ECH
Ssu4g0442 4 7241788 7242357 Ssu7g1798 7 36529416 36530008 PCT