Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1797 ATGGAAAGCGCATCGCCGTCGCAGACCCAACTCAAGGGCCTAGTTTGCACCAACGCAAGTGCCGGTGGGTCCCACGGAGAACAATGTTCCCCGCATGATGGCTCTGAGAGCTTCTATACGAAACTCACTGAGTTGTTGGAGTCCTCTGGACTGAGCCTCGTTATCAATGTACGAGAAACATTGCTGGACTTGTACCTGTTTTACTTGGAGGTAACCAGAAGAGGAGGATATCACCAGGTTGGTCGAGAAAAGAAATGGGGTGAAGTAGTCTCTGCCCTGAAATTGGAAGggaatagtgtaaaattatgtGCTCAAGTTGAAAAGCTTTACGCACATCTTCTCTACCAATTTGAGCAATTGTACTTCTACAGGCGTCCGGCAAAGCAAGCTGGATCTAGCAGCACCAAAGGTCCACTTAAGAAGAAGCGGAATTCAACAGCTAGTTTACCTCATATAATGGATATCAAAGATGGTCAGACAGGGGCTGGGTATGTGGAACAGCCGGTGCTTTTACCGTCGCCCTCGAATgacaaagaaatgaagaaacGCCGAGGTGCTCCGCTGGGACGAAAGAATGCATATCAGATATTCCTCAAGCATGAATGTGCTCGACTGAAAACTTGTAGTCAGGCCTCAGATGGCCAGGGAATCCTACGTATGGCTATTGATGCATGGAGGAATATGTCTGAACTTGAGAAACAGCCATATGTGGAGGCAAGCAAGAAGAACAAGGAAGAAATTAAGCAAGCAATGATTAGTCATAATAAACAGCAGAGCACCCAAGATACCAAGGAAGAGAAGTGGCCTAGTCTGTGTGGTGATTACCTTGTAACTTCGCAACCTGAGGCAGATGACTCCCTTGTCAACAGAGCAACTGTTGGGTTAGCTCTTAAAATGACCGAAAAAGCACCAAAGGATCCTTCATTTCTAGTGGACTGGGATGCTTATCGTTCACTAGATTTACCAAGGGAATCCGAGCATCTCCACTAG 990 0.4535 MESASPSQTQLKGLVCTNASAGGSHGEQCSPHDGSESFYTKLTELLESSGLSLVINVRETLLDLYLFYLEVTRRGGYHQVGREKKWGEVVSALKLEGNSVKLCAQVEKLYAHLLYQFEQLYFYRRPAKQAGSSSTKGPLKKKRNSTASLPHIMDIKDGQTGAGYVEQPVLLPSPSNDKEMKKRRGAPLGRKNAYQIFLKHECARLKTCSQASDGQGILRMAIDAWRNMSELEKQPYVEASKKNKEEIKQAMISHNKQQSTQDTKEEKWPSLCGDYLVTSQPEADDSLVNRATVGLALKMTEKAPKDPSFLVDWDAYRSLDLPRESEHLH 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1797 329 SMART ARID_2 29 118 - -
Ssu7g1797 329 CDD HMGB-UBF_HMG-box 191 251 - -
Ssu7g1797 329 Gene3D High mobility group box domain 185 266 IPR036910 -
Ssu7g1797 329 ProSiteProfiles ARID domain profile. 32 122 IPR001606 GO:0003677
Ssu7g1797 329 PANTHER HMG (HIGH MOBILITY GROUP) BOX PROTEIN 14 314 - -
Ssu7g1797 329 Pfam ARID/BRIGHT DNA binding domain 36 118 IPR001606 GO:0003677
Ssu7g1797 329 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 14 314 - -
Ssu7g1797 329 SUPERFAMILY ARID-like 34 124 IPR036431 GO:0003677
Ssu7g1797 329 SMART bright_3 33 123 IPR001606 GO:0003677
Ssu7g1797 329 Pfam HMG-box domain 189 255 IPR009071 -
Ssu7g1797 329 SUPERFAMILY HMG-box 171 251 IPR036910 -
Ssu7g1797 329 Gene3D - 24 142 IPR036431 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1797 38 254 ARID Transcription Factor Family AT3G13350 24.046 4.11e-13 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Ssu7g1797 ARID 1.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1797 - - var:108325455 402.134