Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1796 ATGGAGTTACTTCCTCGTGAAAACCTTCTCCCTCTTATTCTGTTCATTATCTGTTCTTTTCGGGTTTGTAGAGCAGTGGATTGTAGTGGCATGCAAGTTTCACGTACCATCGTAGTCGATCAGTCCGgcaaatcaaatttcaaaacgATTCAAGCTGCTATTGATTCAGTAGCTACAAACAACAATCAATGGGTGAAAATTCACATAAATGCCGGCACATACAGAGAGAAGGTTCAAATTCCATCTGAAAAGCCATGCATCCTTTTGGAAGGCCAAGGCAAAGATGTCACCACTATTACATACAATGACCACCAAAGAACAGATCTTAGTGCCACGTTCTCTTCGCATCCAAACAACGTTGTTGCAACGGGCATTACTTTCAAGAACACGTTTGATATTGCGGCAATGTTGAATTTGCAAGGGAGGAAAATGGGAAGTTATGGGGATCGGATCCCAGCATTGGCAGCAAGGATATACGGAGACAAATCTGCCTTTTACGATTGTAGATTCATCGGTTTTCAAGATACGTTGTGGGATGTGGAAGGTCGTCACTACTTCAAAAACTGCCTCATCGAAGGTGCCGTAGACTTCATATTTGGCAATGGCCAGTCCTATTACGAgGATTGCGTGCTCAATGTGACTTCCTCTGGTTCCATAACAGCACAAGGACGCAGCTCAAATAGCGACCCAAGTGGTTTTGTGTTCCGACGAGGTTCTGTGTTTGGTAGTGGGAGCACAGTATTAGGGAGAGCCTACGGCCGTTGTTCTAGAGTTATATTTTATGAGACGAACTTAGGTTCTGTGGTTGACCCTCGTGGATGGGATGCTTGGAATTATACAAAACAAGAGGGCTGTATTTCCTACTCTGAGATTGGGTGTAAAGGGGCAGGTGCCAATACTTCCAAACGCGTTCCTTGGACGAAGAAGAAAACGGCTTCAGAACTAAGACAACAATTTTCGACGTCAGTGTTCATCGACCACGATGGCTGGCTCCCAAGATTACCACTGAAATTTTTTGGTGGAGACCACTGA 1032 0.438 MELLPRENLLPLILFIICSFRVCRAVDCSGMQVSRTIVVDQSGKSNFKTIQAAIDSVATNNNQWVKIHINAGTYREKVQIPSEKPCILLEGQGKDVTTITYNDHQRTDLSATFSSHPNNVVATGITFKNTFDIAAMLNLQGRKMGSYGDRIPALAARIYGDKSAFYDCRFIGFQDTLWDVEGRHYFKNCLIEGAVDFIFGNGQSYYEDCVLNVTSSGSITAQGRSSNSDPSGFVFRRGSVFGSGSTVLGRAYGRCSRVIFYETNLGSVVDPRGWDAWNYTKQEGCISYSEIGCKGAGANTSKRVPWTKKKTASELRQQFSTSVFIDHDGWLPRLPLKFFGGDH 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1796 343 SUPERFAMILY Pectin lyase-like 31 338 IPR011050 -
Ssu7g1796 343 Gene3D - 30 341 IPR012334 -
Ssu7g1796 343 Pfam Pectinesterase 37 327 IPR000070 GO:0030599|GO:0042545
Ssu7g1796 343 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 336 - -
Ssu7g1796 343 ProSitePatterns Pectinesterase signature 2. 191 200 IPR033131 -
Ssu7g1796 343 PANTHER PECTINESTERASE 1 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1796 Ssu-Chr7 36481594 36483371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1796 15 283 Carbohydrate Esterase AT2G19150 44.599 4.29e-77 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1796 - - gmx:100800737 519.235