Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1793 ATGGATTTCCAGGGATTCCTAAACGACTTGCAGGATTGGGAACTTTCTAGAAAGGATAAAGCACTAACAATGAAGTCACAAAAGGAAAATGCTTCATCTTCTCAACATACTGGATCTGTGGGTGTGGAGAGGGCATCAAGAGGAGATACTATTTCTTTTGATCGTGCAAGAAATTCTCCCGGACAGTATGATTTATCAAGAATTAATGATCCTTTCAATAGTGTGCATAGTAGTTTTGTTCCTGAAGATGTTCCTGATGCTGCTTCCGAGAAAGACctgGGTAATGAGTTTTTCAAGCAGAAAAAGTTTAAGGAAGCTAGAGACTGCTATTCAAGGAGCATTGCCTTATCACCAACTGCTGTAGCATACGCAAATAGGGCAATGGCCAATATCAAGCTCAGAAGATTCCAAGAGGCTGAGGATGACTGTACAGATGCCTTAAATCTTGATGATCGTTACATAAAAGCATACTCTCGAAGAGCAACAGCTAGAAAAgaacttggaaaaattaaagaatcaatGGAGGATGCTGAATTTGCCTTGAGGTTGGAACCAAACAATCAGGAAATCAAGAAACAGTATGCTGATGCTAAGTCTTTGTATGAGAAAGATATTCTTCAGAAAGCATCCGGAGCTCTGAGAAGCACTGTACAGGGAACTCAAAAAGTGGGAAAGTCAGAGGAAAAAGTTAACGGAGGCAGCATCCACCCCATTTCACATGGTACTCAAAAGTCTGGGCCAGCTGAAGTTCATCATCATAACAAGGGTAATGAGTGGCAAATACCTGTTAAAGAATCACTCTTAATGAGGGAGGTTGATAGCAGAGATACAAAAGCCAGAAGCTGGCCTCAAGCACAAGAACGAAATGGTTCTAAGGAAGGTTTGAGTGCAACCAACAGTTTGGAGCAGATAAATCACAGAATTAGTAAGCAGGAAATGAAAGCATCTGTTCAACAGCTTGCTTCTCGTGCCGCTTCTAGAGCCATGGCTGAGGCTGCCAAAAACATAACAACACCAACTACAGCTTATCAGTTTGAGGTCTCTTGGAGAGCATTTTCAGGTGATCTTGCTCTTCAGGTTCGTCTATTAAAGGCTGTATCTCCCGATGAATTAccgaaaatattcaaaaatgcCTTATCTTCTACCCTGCTAATTGACATAATCAAGTGTCTTGCAACCTTCTTCACTGAAGATATGGATCTGGTTGTCAGTTATATGGAGCATTTGACCAAGGTACCAAGATTTGACGTGATTGTAATGTGCCTTTCATCAACAAATAAGGATGACATACGCAAGATCTGGGATGAAGTGTTCTGTACAGAGGCAACTCCAATTGAGTATGCAGAAATTCTGGACAACCTCCGATCAAAGTTTTGCCTTGGACAGTGA 1389 0.4017 MDFQGFLNDLQDWELSRKDKALTMKSQKENASSSQHTGSVGVERASRGDTISFDRARNSPGQYDLSRINDPFNSVHSSFVPEDVPDAASEKDLGNEFFKQKKFKEARDCYSRSIALSPTAVAYANRAMANIKLRRFQEAEDDCTDALNLDDRYIKAYSRRATARKELGKIKESMEDAEFALRLEPNNQEIKKQYADAKSLYEKDILQKASGALRSTVQGTQKVGKSEEKVNGGSIHPISHGTQKSGPAEVHHHNKGNEWQIPVKESLLMREVDSRDTKARSWPQAQERNGSKEGLSATNSLEQINHRISKQEMKASVQQLASRAASRAMAEAAKNITTPTTAYQFEVSWRAFSGDLALQVRLLKAVSPDELPKIFKNALSSTLLIDIIKCLATFFTEDMDLVVSYMEHLTKVPRFDVIVMCLSSTNKDDIRKIWDEVFCTEATPIEYAEILDNLRSKFCLGQ 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1793 462 MobiDBLite consensus disorder prediction 216 298 - -
Ssu7g1793 462 MobiDBLite consensus disorder prediction 26 41 - -
Ssu7g1793 462 MobiDBLite consensus disorder prediction 283 298 - -
Ssu7g1793 462 Pfam Potential Monad-binding region of RPAP3 339 427 IPR025986 -
Ssu7g1793 462 SUPERFAMILY TPR-like 83 199 IPR011990 GO:0005515
Ssu7g1793 462 MobiDBLite consensus disorder prediction 268 282 - -
Ssu7g1793 462 Gene3D Tetratricopeptide repeat domain 79 185 IPR011990 GO:0005515
Ssu7g1793 462 ProSiteProfiles TPR repeat profile. 154 187 IPR019734 GO:0005515
Ssu7g1793 462 MobiDBLite consensus disorder prediction 21 58 - -
Ssu7g1793 462 ProSiteProfiles TPR repeat profile. 87 120 IPR019734 GO:0005515
Ssu7g1793 462 SMART tpr_5 87 120 IPR019734 GO:0005515
Ssu7g1793 462 SMART tpr_5 121 153 IPR019734 GO:0005515
Ssu7g1793 462 SMART tpr_5 154 187 IPR019734 GO:0005515
Ssu7g1793 462 PANTHER OS05G0129900 PROTEIN 1 461 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1793 49 191 Calmodulin-binding Proteins AT3G25230 26.415 1.83e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1793 K23002 - gmx:100784528 762.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1793 7 36423893 36429921 Ssu7g1793 7 36423893 36429921 ECH