Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1790 ATGGAAGATATTTACAAGATGAACCCTCTTCTATCTTGTTCCGAGGATGTTGTTAGAGAAGTCAACGTCAACGTTTCTGCTACTGCTGCTTCTGAATTGAATCTGGGACTTGTGGCCAATAACTTCCTTCATCTGGAAGAGCCCGAAAGTTCGGACATGTCGGATCGGTTCGTCAAGACCCAGATCGCCACTCACCCTCTATATCCAAATCTAGTGTCTGCTTACATAGAATGTCGAAAGGTTGGAGCACCACCAGAACTGGCTTCACTTCTTGAAGAAATAGCCCGTGAAAGCCACCCAACGGATGCTCTTCGTGAGATTGGAGATGATCCTGAGCTTGACGAGTTcatgGAGTCATACTGCGAAGTTCTTCATAGATACAAGCAGGAGTTGTCCAAGCCATTCAACGAAGCGACCTTGTTTTTGTGTAATATCGAGTCACAACTCAGCAATCTTTGTAAGGGAACACTAACAATGCCGTCTGATAACAACCGCTCAGATGAGGCAGCTGGGACATCAGAGGATGAATTAAGTTGGGAGAAGATGGAAGCAGTTGAAGGTCACGAATCTTCTGGCCCACGTCCAGGTGATCAAGAGCTTAAAGAAATGCTCCTTCGTAAGTATGGTGGTTATCTTAGCAGCTTGAGAAAGGAATTtctaaagaaaaggaaaaagggtaAGCTACCAAAGGACGCAAGGGTGGTACTGATGGACTGGTGGAACTCCCACTATAGGTGGCCTTATCCTACGGTAATTGGAATTAATATCATGAAGTATTTATGA 783 0.4355 MEDIYKMNPLLSCSEDVVREVNVNVSATAASELNLGLVANNFLHLEEPESSDMSDRFVKTQIATHPLYPNLVSAYIECRKVGAPPELASLLEEIARESHPTDALREIGDDPELDEFMESYCEVLHRYKQELSKPFNEATLFLCNIESQLSNLCKGTLTMPSDNNRSDEAAGTSEDELSWEKMEAVEGHESSGPRPGDQELKEMLLRKYGGYLSSLRKEFLKKRKKGKLPKDARVVLMDWWNSHYRWPYPTVIGINIMKYL 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1790 260 ProSiteProfiles ELK domain profile. 199 219 IPR005539 GO:0003677
Ssu7g1790 260 Pfam KNOX1 domain 58 99 IPR005540 GO:0003677|GO:0005634
Ssu7g1790 260 SMART KNOX2_2 103 154 IPR005541 GO:0003677|GO:0005634
Ssu7g1790 260 Gene3D - 217 252 - -
Ssu7g1790 260 Pfam KNOX2 domain 107 153 IPR005541 GO:0003677|GO:0005634
Ssu7g1790 260 SMART ELK_2 199 220 IPR005539 GO:0003677
Ssu7g1790 260 SMART KNOX1_2 56 100 IPR005540 GO:0003677|GO:0005634
Ssu7g1790 260 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 250 - -
Ssu7g1790 260 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 1 250 - -
Ssu7g1790 260 Pfam ELK domain 199 220 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1790 Ssu-Chr7 36381005 36384208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1790 58 250 Homeobox Transcription Factor Family AT1G70510 49.751 2.63e-57 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1790 - - gmx:102660463 446.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0438 4 7120352 7130222 Ssu7g1790 7 36381005 36384208 PCT