Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1777 ATGGAGATCCAGAAAAGACGTTTCAAGGGAAGCTTCCTTAGCTTCTTTGACTGGAATGGCAAATCTCAAAAGAAGCTGCTTTGTGACAATCCTAAGTTACCTGAAGTTTCAAAGCAAGGAAAGGAAAACATGGACAGCATGCCAAAGTCACAGTTGTTTCAGATAAAAATGGATGACAATGGAGCAAATCCTAGCAACATTGCAAGTTGTGATTTTGATTGTGCCTTATCAATTAATAGTGATGAAGGGTGTGGGACTAAAGCCCCAGGGTTAGTAGCCAGACTCATGGGTTTGGATTCACTGCCAGTTTCAACTGTTTCTGAGCTCTCCTCATCCTCCACTTCATTATATGGCTCCAACTCTCTTGGATCTCCCCATTGTCATGAGGATGCTCTTCACTCAATGGTTGACTATTGTTGCCCTGTGGATCCCATAAACATGCGACTTAAGCCAGATAAATCTTCATGGAGTGTCATGGAATCAAAGGCTCAGACAGTGGGAAACCGGGCAATGAAGAGATTTCAGACTGAAATGTTGCCTCTAAAGTCTGCTAAACCCATTCCAGTTACTCACAACAAACTTTTGTCTCCTATCAAGAGCGCTGGTTATATGCAACCAAATGATGCAGCTCATATAATGGAGGCAGCTGCCAAAATAATTGAGGCAAGTCCCCAGCCATGTATGAGGAATAGAATGTCTTCAGCTGGACCTTCATCTGTTTCCTTAAGAATTCTTGATCTGAAAGAGAAATTGGAAGCTGCGCAATATGAATCCAAGTTCACGGGTATGCATGCTGCTAACCCTCTGAATAGCAAGCCTAGGGAGAGGAGAAGCAATTTATATAAATCCACTCCAAGTTTCAAAGGTTCAAGAGATTCAGAAAAAAACAGTTCTTGGCAGTTGGCAAGCAAAGGAAAATCTGTTTCACTTGCAATGCCATCTAAAACCAATGTTCAGAGCTGTGATGAATTGACTTTGAATGGTAATAGGGGATATATGAAGCAGAAAGAACAGAATGATATCAAATCAAACCAGCTGCCTAGGAGCCAGAAGAAACAAATTACAGACCAGGCCAGGGTCATGCTGCAGAGAGGTTGTACAGGCCAGAATAGCAATGTGCATGGGAAGAATATTCAAAAGCAGAAAAGTGTAACCAACAAAGGTAATTCAGTTTCAAAGGTGGACTCTAATAAGCCAATGCGAACTTGGTCTTCAGAAAGTTCTACTGGAGCAAGGAAGACTAATAAGGGTGTAAATGCCAACATTGAGCCCAAAAGGACTGGCAGAAGGGTAATTGATGCCCCAAAGGAGTTTCCAGTTTccaaaaaaaagagtatttcccaaaagaaaaactatatcAATAGGGATGTTCACAATGAGTCAAGAGGTTCTGATACTGCAGctaataattatgaaaacaaGTCCATAAAATGTAATATCACAACTGATGGAAGTATTGACCAGGATGCATTTAGCATGAATGGAAGCAATGGTGTGATTTCATTTACATTTACATCACCCATGAGAAGAAACATGTCCGAGTTACAGTCCTCCACTGAGCAAGTGATGGGAACAAGGAACAAAATTGATGTCAATTCTGGTAGTAATAGCGATAAGCTTTATcccaaaaaattatcattatctccTCCCACGTTACATGTAATAGATGGTGATGCTTTAAGTGTCCTTTTGGAGAAAAAGCTGCAAGAATTGACATCTAGAATTAACCCACCTCAATGCTCCCTGACGACAGAAGGGTCTTTTGCtagtttaaaatctagtttgGAAGACAAATTTCAGACTGTAGTAAGCACTACAGCAAGGGAACAAGGCGGAAGCTTTCACCCCAACCTGCTTAGTAATAAATTGGACAGCATGCATGACAATTGTTTGTCAAGTGATAATATGGTGCTTAACATGAATCAGCTACTACAgACATCAGAATCAATGGAAGAGCCTAGCTGTAGCAGCAACAGCGAAAGCAGAAATGAAAGTTACGCAGATAACACATACGGCAGCACAGTTTATTGTTCCatgcaagatgaagaggtatcTAATTTTTGTCCAATGAATGGATCTATATCACTTGGAAACGAGGCGAAATGGTTTGAGCAAAGCTCATCCATAGTGATGGGGGATAACATGGCAGCCATCAAACAATCAAGTGTAATGTCAAATTCAGTCAAATTTACAAGATCAGAAAGTAATGTGGAACTTGAGTATGTAAAGGATATACTCAGCAATGCAGAGTTGATGACAGAAGAATTTGTGGTGGGTGGGACAAATAAGATCATAATGCCAAATCTATTTTATCTGTTTGAGAATAATAGCATTGGGGCAGAAAACTATGAAGAGTGCTCTAAGATTGAGAGGAAGGCTATATTTGACACTGTGAGTGAGTGCTTAGAATTAAGATGTAGACAAGTTTTTGTTGGAAGCTGCAAATCATGGCCTAGATGGGTGGCTTCAGTTCAGAGAAAGAACTGTTTAGCAGAAGAATTGTACAAGGAAATGTTAGGCTTTAGAAGTATGGAAGAAGAGGTGGTGGTTGATGAGCTTGTCAGCAAGGACATGAGCACCCGATGGGGTAAATGGCTTGACTTTGACATTGAAGCCTTTGAAGAGGGTTCAGAACTTGAGTTTGAAATTGTAACTTATTTGATTAACGATTTGGTTTCTGATTTGTTACACGTTTAA 2697 0.389 MEIQKRRFKGSFLSFFDWNGKSQKKLLCDNPKLPEVSKQGKENMDSMPKSQLFQIKMDDNGANPSNIASCDFDCALSINSDEGCGTKAPGLVARLMGLDSLPVSTVSELSSSSTSLYGSNSLGSPHCHEDALHSMVDYCCPVDPINMRLKPDKSSWSVMESKAQTVGNRAMKRFQTEMLPLKSAKPIPVTHNKLLSPIKSAGYMQPNDAAHIMEAAAKIIEASPQPCMRNRMSSAGPSSVSLRILDLKEKLEAAQYESKFTGMHAANPLNSKPRERRSNLYKSTPSFKGSRDSEKNSSWQLASKGKSVSLAMPSKTNVQSCDELTLNGNRGYMKQKEQNDIKSNQLPRSQKKQITDQARVMLQRGCTGQNSNVHGKNIQKQKSVTNKGNSVSKVDSNKPMRTWSSESSTGARKTNKGVNANIEPKRTGRRVIDAPKEFPVSKKKSISQKKNYINRDVHNESRGSDTAANNYENKSIKCNITTDGSIDQDAFSMNGSNGVISFTFTSPMRRNMSELQSSTEQVMGTRNKIDVNSGSNSDKLYPKKLSLSPPTLHVIDGDALSVLLEKKLQELTSRINPPQCSLTTEGSFASLKSSLEDKFQTVVSTTAREQGGSFHPNLLSNKLDSMHDNCLSSDNMVLNMNQLLQTSESMEEPSCSSNSESRNESYADNTYGSTVYCSMQDEEVSNFCPMNGSISLGNEAKWFEQSSSIVMGDNMAAIKQSSVMSNSVKFTRSESNVELEYVKDILSNAELMTEEFVVGGTNKIIMPNLFYLFENNSIGAENYEECSKIERKAIFDTVSECLELRCRQVFVGSCKSWPRWVASVQRKNCLAEELYKEMLGFRSMEEEVVVDELVSKDMSTRWGKWLDFDIEAFEEGSELEFEIVTYLINDLVSDLLHV 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1777 898 Pfam DUF761-associated sequence motif 80 107 IPR032795 -
Ssu7g1777 898 MobiDBLite consensus disorder prediction 264 316 - -
Ssu7g1777 898 MobiDBLite consensus disorder prediction 282 316 - -
Ssu7g1777 898 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 1 898 - -
Ssu7g1777 898 Pfam Domain of unknown function (DUF4378) 738 889 IPR025486 -
Ssu7g1777 898 PANTHER DUF4378 DOMAIN PROTEIN 1 898 - -
Ssu7g1777 898 MobiDBLite consensus disorder prediction 367 420 - -
Ssu7g1777 898 MobiDBLite consensus disorder prediction 647 667 - -
Ssu7g1777 898 MobiDBLite consensus disorder prediction 367 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1777 Ssu-Chr7 36253278 36257049 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1777 3 896 TRM (TON1 Recruiting Motif) Superfamily AT5G26910 30.097 1.68e-85 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1777 - - gmx:102665160 1340.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0427 4 6986937 6990781 Ssu7g1777 7 36253278 36257049 PCT