Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1776 ATGGGAAGCAGTAGCAGGAAGAAGAAGCAAGATCTGGAGTTAGAGAAAGCTCGCTTAATCAGTTTAGCCCTCGATTTCGGCTTCGACGAATCCTCCGCCAACAAATGCCTCGACCGTCTTATCGCTCTCTACGGCGAAGACGGTCGCGATTTCATCACCGTCGAGCACTGCGGCGACGATTTTCTCGCGGCTCTGGCGGAGTCGATGCAGGCCACCGAGGATTGGGACGACCTGCAGGAAATGGAATCGCAAGCGTGTGGAGCCTTGACGCACGTGCTCGACAAAACTGTTGCCACGTGCGCCAGTGCGGATAACGACGATGCTTCGAGAAGCTTCATTAACATTGTTGACGACTCGCCTCAACCGCAGAGACGCAAACACCACACCAATAATGTAGTGGAGTTGGACTCGAGTGACGATGAGGACATGCACTGTGGTTTTTCAAGGGGAAAATCTCTGGATTACAGAAGTGGTATCACTCAAGGCTCGGTTTCATCAACTTCCAGCAAAATGCAATCCTCCTTTGCATCAAGGGATAAAAGCAGTACTCTCACTTACGAAGAATTGCAAGCACTAGATGATATTGAATTGGCAAATGTTGTTATCTTCGGTAATAGGACATTTCGACCATTGCAACATCAAGCATGTAAAGTAGCTTTGGCAAAGCAagattcttttattcttatGCCCACTGGGGGCGGTAAATCTCTTTGCTATCAGCTTCCAGCAACTCTTCAACCAGGTGTTACAGTAGTTGTATCTCCATTACTTTCACTCATTCAGGATCAGATAATAACACTAAACCTCAAGTTTGGAATACCTGCtacttttttaaattctcaACAAACTGTTTCCCAGGCCACAGCTGTCCTCCAAGAGCTAAGAAAAGACAAACCATCATGCAAACTCTTGTATGTGACACCTGAGAGAATTGCTGGCAACCAATCGTTTCTTGAGATTCTAAAATGCATGCATCAGAAGGGACAGCTAGCAGGTTTTGTTGTTGATGAGGCACACTGTGTTAGCCAATGGGGTCATGATTTCCGGCCTGATTATCGGGGATTGGGATCTCTTAAGCAACACTTTCCATATGTACCTGTCATGGCATTGACTGCCACTGCAACCCATGCAGTTCGTGAGGACATATTAAATGCTTTAAGAATTCCCCATGCACTTGTTCTTGAAAGAAGCTTTGACAGACCAAATTTGAAATATGAAGTGATGGGTAAGACAAAGGAGCCACTAAAGCAGCTTGGACAGCTACTAATTGATCGCTTCAAGAATCAGTGTGGAATTGTTTACTGTCTTTCAAAAAGTGAATGTGTTGAGGTCTCCAAatttttgaatgagaaatgTAAGATCAAGACAGTGTATTACCATGCTGGCTTGGCTGCCCGCCAGAGAGTAGCTGTTCAAAAGAAATGGCATGAGGGGGAGGTCCATATTGTATGTGCAACTATTGCTTTTGGAATGGGGATAGACAAACCTGATGTTCGCTTTGTCATCCACAATACAATGTCAAAGTCAATCGAAAGTTATTATCAAGAATCTGGAAGGGCTGGAAGAGATAATCTTCCTTCGGTTTGCATTGCTCTATACCAGAAGAAGGATTTTAGTAGAGTTGTATGCATGATAAGAAACGGCCAAGGATATAAAAAGGATAGTTTTAAGACAGCAATGGCTCAAGCCAAAAAGATGCAACAGTACTGTGAAATAAAGGTTGAATGCCGGAGACAAACTTTACTCAAACACTTTGGAGAATCTTTTGATAGAAAAGCCTGCAAGTATGGATCTAGCCCCTGTGATAACTGTCTCAAGACTGCACTATGA 1830 0.4333 MGSSSRKKKQDLELEKARLISLALDFGFDESSANKCLDRLIALYGEDGRDFITVEHCGDDFLAALAESMQATEDWDDLQEMESQACGALTHVLDKTVATCASADNDDASRSFINIVDDSPQPQRRKHHTNNVVELDSSDDEDMHCGFSRGKSLDYRSGITQGSVSSTSSKMQSSFASRDKSSTLTYEELQALDDIELANVVIFGNRTFRPLQHQACKVALAKQDSFILMPTGGGKSLCYQLPATLQPGVTVVVSPLLSLIQDQIITLNLKFGIPATFLNSQQTVSQATAVLQELRKDKPSCKLLYVTPERIAGNQSFLEILKCMHQKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGSLKQHFPYVPVMALTATATHAVREDILNALRIPHALVLERSFDRPNLKYEVMGKTKEPLKQLGQLLIDRFKNQCGIVYCLSKSECVEVSKFLNEKCKIKTVYYHAGLAARQRVAVQKKWHEGEVHIVCATIAFGMGIDKPDVRFVIHNTMSKSIESYYQESGRAGRDNLPSVCIALYQKKDFSRVVCMIRNGQGYKKDSFKTAMAQAKKMQQYCEIKVECRRQTLLKHFGESFDRKACKYGSSPCDNCLKTAL 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1776 609 SMART ultradead3 204 408 IPR014001 -
Ssu7g1776 609 Pfam DEAD/DEAH box helicase 210 378 IPR011545 GO:0003676|GO:0005524
Ssu7g1776 609 Pfam RecQ zinc-binding 536 605 IPR032284 -
Ssu7g1776 609 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 331 340 IPR002464 -
Ssu7g1776 609 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 216 392 IPR014001 -
Ssu7g1776 609 Gene3D - 164 399 IPR027417 -
Ssu7g1776 609 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 247 545 IPR027417 -
Ssu7g1776 609 SMART helicmild6 442 524 IPR001650 -
Ssu7g1776 609 CDD DEXHc_RecQ 202 399 - -
Ssu7g1776 609 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 202 607 IPR004589 GO:0004386|GO:0006310
Ssu7g1776 609 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 417 564 IPR001650 -
Ssu7g1776 609 PANTHER DNA HELICASE RECQ FAMILY MEMBER 32 607 - -
Ssu7g1776 609 CDD SF2_C_RecQ 400 533 - -
Ssu7g1776 609 Pfam Helicase conserved C-terminal domain 416 523 IPR001650 -
Ssu7g1776 609 Gene3D - 400 608 IPR027417 -
Ssu7g1776 609 PANTHER BLOOM SYNDROME PROTEIN 32 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1776 Ssu-Chr7 36241161 36247046 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1776 422 522 Eukaryotic Initiation Factors Gene Family AT5G11170 32.673 1.57e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1776 K10899 - gmx:100806070 1107.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1776 7 36241161 36247046 Ssu7g1776 7 36241161 36247046 ECH