Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1770 ATGGCGACGAGAAATCGAACTTTGCTTTTCAGAAAACACAGAGATGCATTGAAGAGTGTTCGGGTTCCGTCCATCTCTTCGGCGCCGTCCACCGCTTCCGGCGCCGGCGGTGGCCCCGTCATCGAATTGGTCAGCACCTCGCTTCTCAATCCGAATCGCTCTTACGCTCCGCTTAGTACCGAAGATCCCGGCAATTCGAGTAGGGTTCAAAATGCAGTTAGTGTGGGGCTACCCCCGGCGTGGGTGGATTTATCAGAAGAAATATCAGCAAATGTGCAACGTGCACGCACAAAAATGGCAGAGTTGGCCAAGGCTCATGCAAAGGCTTTGATGCCGTCATTTGGAGATGGTAAGGAAGACCAACGTGCTATTGAGTCTCTAACACATGAGATAACTGACTTGATAAAGAGGTCGGAGAAGAGACTGCGGAGACTTTCTGCTACTGGGCCTTCTGAGGATTCCAATGTCAGGAAAAATGTGCAGCGTTCTCTTGCTACTGACCTTCAGAACCTCTCTGTAGAACTCCGCAAGAAACAATCAACTTATTTAAACCGCCTCCGGCAGCAAAAAGAGGGTCAAGATGGAGTTGATTTGGAGATCAACTTAAATGGAAGTAAATCCAGATATGAAGATGATGACTTAGATAATATGGTATTTAATGAACATCAAATGGCCAAGCTGAAAAAAAGTGAAGCATTCAcagtagaaagagaaaaagagatccAACAGGTTGTGGAATCTGTGAACGAGCTTGCTCAGATTATGAAGGATTTATCAGTACTAGTCATAGACCAGGGAACCATTGTCGATAGAATAGACTACAACATTCAGAATGTTGCAACCACAGTTGAGGATGGCCTTAAACAGCTGCAGAAGGCAGAGAGAACCCAAAAAAAGGGGGGCATGGTAATGTGTGCTACTGTGCTTCTCATCATGTGCTTCGTCATGTTGGTTCTCTTAATCATTAAGGAAATTATTTTGTGA 984 0.4441 MATRNRTLLFRKHRDALKSVRVPSISSAPSTASGAGGGPVIELVSTSLLNPNRSYAPLSTEDPGNSSRVQNAVSVGLPPAWVDLSEEISANVQRARTKMAELAKAHAKALMPSFGDGKEDQRAIESLTHEITDLIKRSEKRLRRLSATGPSEDSNVRKNVQRSLATDLQNLSVELRKKQSTYLNRLRQQKEGQDGVDLEINLNGSKSRYEDDDLDNMVFNEHQMAKLKKSEAFTVEREKEIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVEDGLKQLQKAERTQKKGGMVMCATVLLIMCFVMLVLLIIKEIIL 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1770 327 CDD SNARE_syntaxin16 236 292 - -
Ssu7g1770 327 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 231 293 IPR000727 -
Ssu7g1770 327 Coils Coil 85 105 - -
Ssu7g1770 327 Pfam SNARE domain 267 319 IPR000727 -
Ssu7g1770 327 ProSitePatterns Syntaxin / epimorphin family signature. 237 276 IPR006012 GO:0005484|GO:0006886|GO:0016020
Ssu7g1770 327 Gene3D - 78 285 - -
Ssu7g1770 327 SMART tSNARE_6 226 293 IPR000727 -
Ssu7g1770 327 PANTHER TARGET SNARE COILED-COIL-LIKE DOMAIN-CONTAINING PROTEIN-RELATED 1 322 - -
Ssu7g1770 327 SMART SynN_4 72 187 IPR006011 GO:0016020
Ssu7g1770 327 SUPERFAMILY t-snare proteins 77 286 IPR010989 GO:0016020|GO:0016192
Ssu7g1770 327 PANTHER SYNTAXIN 1 322 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1770 Ssu-Chr7 36177715 36182404 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1770 1 327 SNARE and Associated Proteins AT5G26980 76.758 0.0 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1770 K08489 - gmx:100796741 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0614 4 9778688 9783483 Ssu7g1770 7 36177715 36182404 ECH
Ssu7g1770 7 36177715 36182404 Ssu7g1770 7 36177715 36182404 ECH