Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1768 ATGGTAAGGGGAGGAAAGTTTAGTGGCAAACACAATTTCAGAAAAAGGGTTCAGTCAAAGGAGGGAGGTTCTGATGATTCGGATGAGGACTATGTGCTTTCAGATGAAGGTAGAGATGCATCTGACTATTATTGCTCCTCGTTAGATGGATGTGCATCAGAGGAGAGTTTTGATAGCTTAttggaagaggaggaggaggaattTCGAGGAGTGAGGAATTCCAATAGATCCAAGGCAAAAAAGGGCATTGCTGGTCAGCGGAAAAATGCTGGTAAAAAATCACTCAAGAGGGGAAGGATTACATATGccgaagaagaagaggaggaagagtTAGAAGAAGAGTTGGAAGAAGAGTTAGacaaagaggaagaggaagaagacaaagaggaggaggaagaaatACAAGAAGTGAGGAATTTCAATAGGTCAAAGGCCAAAAATGGTGTATGCAGTAAGAAAAAAAGTGCTGGTAAAAACTCCTCAAAGAGGGGAAGGAAAATACATGCAGAACAACtggaagaagaggaggaggaggagaaacAGGAGGAGAAGGTAGAGATGGAGAGAGGTGGagatgaggaagaagaagaggagagagatagagatgGAGAGGATGAAGATTTTGACtatgatgatgaggatgatgaATTTTTGCCAATGGAAGAAGATTATTCAGATGAGGAAGAAGAAATGAGggggagaaagaagaaaaatgatggCATGAAAATGGACAAGAAGGTTTTACAGAAGAAAAGGGCCTCTGTGGTTTCTACCAGAGTTCGAAAAAGGCGGAGTTCTAGAGCATCAAAGAAGCAGCCCTTGAggaacaaaagaagaaagaatgggggtttaaggaagaaagaaagatgtGACGATGAAGATGATTTTATAGATAATGGCCCAGCCATCAGGACAGCAAGTAGGAGAAAACGGGGCCAGAAGAGGAGATGGGTGCATCTTTCAGATTCAGATTATGCATCTTCTGGATCATCTGATTTTGAGTTTACCATATCTGAAGAAGAGAGAGAACAGGTAAGAGAAGCCAAGAAATTGTGTGGAAATTTGAGAAATAACTTGAGGAGTTCATCCCATCTAATAAATAATGAAGAGGTTGGTGTCCATGAGGATCAACATCAGCAGCGGAAGCCTCCAGGTCGGAAGGGTAAGGAAAAGATAGAAGAACCTCAAGGACGAAAGGGTAAGGAAAAGGTGGAGGATTTAAAAAGTGAGGTGGGAAAGCATATGTGTGGAATTTGTCTATCTgaagaagataaaagaagagtaaGGGGAGTGCTAAATTGTTGCACTCACTTCTTTTGTTTTGCTTGCATTATGGAGTGGGCAAAGGTGGAATCTCGCTGCCCTGTGTGTAAGCAGAGATTCAACACAATCAGCAAGCCTGCACGGTCAACGGCAGGAATTGATTTAAGAGAAGTGGTGATACAAGTCCCTGAACGTGACCAGGTTTATCAGCCCACTGAAGAAGAACTCAGGAGCTATATTGATCCATATGAATATGTTATTTGTTCAGAGTGTCATCAAGGTGGAGATGATGGCCTCATGCTACTCTGTGATATCTGTGATTCCCCTGCACACACATATTGTGTTGGTTTGGGGCGGGAAGTTCCTGAAGGTAATTGGTATTGTGATGGCTGTAGACCAGTTGCTTTGGGATCTTCAAGCTCCCAAGTTCAAGAAGGTGTGGTTGATCCAAGGGTAACAATACAGAACCTTCCTGTTAGACCACCCCCTGTTGTACATGCACGAGAAAGTATAGACCTCAACTTGATTTCATCACCCCGTGCAGCTTTTAATCAAGGTTTTGGGTATCTTTCATCTTCTAGATTTAGTGGCAGAAGTGTCGAAGGAGCTTCTCCCGTATCTGGAGGGGCACCAACCTTATCAGAGAGACGCTGGATACACCGTCAAATTCAACAACTACTTTCAATAGATAGGATGAGTTCTACACCTGGCAGAACCAATGGTATTTCAGCTACCAGTTCAGCTAGTAACTTATATAGCTCTCAAATTGAACAAAGTAGGGGAGCCGCCACTTTACTTACAAGGACACAGGATGTGGGAACATCATACCACACATTTTTTGACGAGAGATTATGCAACAATACCTCTCCATTAATGCAGAATGGAGCATTATGGCCTGGACTTATGGGAACACCCCCAGTGCCAGATTGTGAACAAGTTCATCAGTTCAGCAGAGCAAACATTGTCCCTGATGGTGGCTTATCCCCTGCTGTCAGAGAAGAGAGTAACTTTCACATTGCAAAGGAGCAGTTGCAGTCAATGGTTAAAAGCCACCTGAAGAGCTTGTCTCAAAATATTGATTTAGGTAAGTATTGCTTTTCTTCTCAGTTACAGATTTTTTGTTTCTACCACTTTTTTTCTCGTTCATCATATGGGGAGGGAGGGATTTTTGCTACATTTGGGACTAAACACATAAAGTGGGGCCTCCCCCACTTTTAG 2481 0.3833 MVRGGKFSGKHNFRKRVQSKEGGSDDSDEDYVLSDEGRDASDYYCSSLDGCASEESFDSLLEEEEEEFRGVRNSNRSKAKKGIAGQRKNAGKKSLKRGRITYAEEEEEEELEEELEEELDKEEEEEDKEEEEEIQEVRNFNRSKAKNGVCSKKKSAGKNSSKRGRKIHAEQLEEEEEEEKQEEKVEMERGGDEEEEEERDRDGEDEDFDYDDEDDEFLPMEEDYSDEEEEMRGRKKKNDGMKMDKKVLQKKRASVVSTRVRKRRSSRASKKQPLRNKRRKNGGLRKKERCDDEDDFIDNGPAIRTASRRKRGQKRRWVHLSDSDYASSGSSDFEFTISEEEREQVREAKKLCGNLRNNLRSSSHLINNEEVGVHEDQHQQRKPPGRKGKEKIEEPQGRKGKEKVEDLKSEVGKHMCGICLSEEDKRRVRGVLNCCTHFFCFACIMEWAKVESRCPVCKQRFNTISKPARSTAGIDLREVVIQVPERDQVYQPTEEELRSYIDPYEYVICSECHQGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALGSSSSQVQEGVVDPRVTIQNLPVRPPPVVHARESIDLNLISSPRAAFNQGFGYLSSSRFSGRSVEGASPVSGGAPTLSERRWIHRQIQQLLSIDRMSSTPGRTNGISATSSASNLYSSQIEQSRGAATLLTRTQDVGTSYHTFFDERLCNNTSPLMQNGALWPGLMGTPPVPDCEQVHQFSRANIVPDGGLSPAVREESNFHIAKEQLQSMVKSHLKSLSQNIDLGKYCFSSQLQIFCFYHFFSRSSYGEGGIFATFGTKHIKWGLPHF 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1768 826 ProSiteProfiles Zinc finger PHD-type profile. 506 555 IPR019787 -
Ssu7g1768 826 PANTHER F18C1.6 PROTEIN 1 166 - -
Ssu7g1768 826 MobiDBLite consensus disorder prediction 369 404 - -
Ssu7g1768 826 MobiDBLite consensus disorder prediction 255 284 - -
Ssu7g1768 826 SUPERFAMILY FYVE/PHD zinc finger 479 554 IPR011011 -
Ssu7g1768 826 Coils Coil 338 358 - -
Ssu7g1768 826 Pfam PHD-finger 508 554 IPR019787 -
Ssu7g1768 826 Coils Coil 101 139 - -
Ssu7g1768 826 CDD RING-HC_Topors 416 458 - -
Ssu7g1768 826 SMART ring_2 416 457 IPR001841 -
Ssu7g1768 826 PANTHER F18C1.6 PROTEIN 166 787 - -
Ssu7g1768 826 MobiDBLite consensus disorder prediction 285 299 - -
Ssu7g1768 826 Coils Coil 165 197 - -
Ssu7g1768 826 MobiDBLite consensus disorder prediction 1 35 - -
Ssu7g1768 826 MobiDBLite consensus disorder prediction 228 251 - -
Ssu7g1768 826 MobiDBLite consensus disorder prediction 366 404 - -
Ssu7g1768 826 MobiDBLite consensus disorder prediction 81 95 - -
Ssu7g1768 826 Pfam Ring finger domain 415 458 IPR001841 -
Ssu7g1768 826 ProSitePatterns Zinc finger RING-type signature. 435 444 IPR017907 -
Ssu7g1768 826 SUPERFAMILY RING/U-box 415 464 - -
Ssu7g1768 826 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 393 479 IPR013083 -
Ssu7g1768 826 ProSiteProfiles Zinc finger RING-type profile. 416 458 IPR001841 -
Ssu7g1768 826 MobiDBLite consensus disorder prediction 174 227 - -
Ssu7g1768 826 MobiDBLite consensus disorder prediction 105 133 - -
Ssu7g1768 826 MobiDBLite consensus disorder prediction 63 331 - -
Ssu7g1768 826 PANTHER F18C1.6 PROTEIN 1 166 - -
Ssu7g1768 826 MobiDBLite consensus disorder prediction 147 162 - -
Ssu7g1768 826 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 481 556 IPR013083 -
Ssu7g1768 826 PANTHER F18C1.6 PROTEIN 166 787 - -
Ssu7g1768 826 SMART PHD_3 508 553 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1768 Ssu-Chr7 36167552 36170112 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1768 503 552 C2H2 Transcription Factor Family AT3G01460 46.154 1.83e-08 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ssu7g1768 PHD 4.1e-09 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1768 7 36167552 36170112 Ssu7g1768 7 36167552 36170112 ECH