Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1760 ATGCGGCGAACCGGCGTGATTTTCGAAGAATTACCGAAGGCCACCATCGTCTCCGTGTCGAGACCAGAGACCGGAGACATTAGCCCAATCCTCCTTTCTTATACCATTGAGTTGCAGTATAAACAGTTCAAGTGGCGTCTACTGAAGAGAGCATCACAAGTTCTCTATTTACAGTTTGCTTTGCGGAAACGTGCAATAATTGAAGATTTTCATGACAAGCAAGAGCAGGTAAAAGAATGGCTTCAATACTTAGGAATAGTAGATCAAACGGTAATGGAGCAAGATGATGAAGAACCTGATGATGGACCTGTGCCTTTACATCATGAAGACAGTGTTAAAAAcagATATGTTCCATCCGTTGCTGCTCTATCAATAATTCGTCCATCACTAGGAGGGCAGCAGTCAATTGCAGATAGAGCCAAAGTCACAATGCAGGGTTATTTGAATCATTTTTTAGGAAACCTGGATATTGTGAATTCTCAAGAGGTCTGCAAGTTTTTGGAAGTCTCCAAGCTATCCTTTTTACAGGAGTATGGTCCAAAACTAAAAGAAGGATATGTAATGGTGAATCATTTGTCAAATATTTCACAGGATTCGGATGTATCATGCTTCCCATGCAATTGGTTTCATTGCTGTGATAACAACCAGAAGAAGGTATGGGCTGTTTTGAAACCTGGGTTTTTGGCCTTCCTGGATGATCCCTTCAACAACAAACCACtggatataattatttttgatatccTCCCTTCCTCAAATGGAGAgaccaaaatatatttagctGATCCTATAAAAGAACACAATCCTTTGCGTTACACATTCAAGgtTTCTAGTGGAAATAGGAGCATATTGTTGAGAACTACCAGCAGTGCTAAAGTAAAAGCTTGGGTTACTGCAATTAATGAAGCTAGTCTAAGACCTCTTGAGGGTTGGTGTTGTCCTCATCGCTTTGGTTCCTTTGCTCCCATAAGAGGTTTGACTGAAGATGGGAGCCAAGCCCAATGGTTTGTAGACGGACAGGCAGCATTTGAAGCAATTGCTACTTCAATTCAAGATGCAAAGTCAGAGATCTTCATTACGGGTTGGTGGCTGTGCCCAGAGCTATATCTGAGACGGCCTTTTCATAGTTTTTCTACCTCTCAGTTAGATTCATTACTAGAAGAAAAGGCTAAGCAAGGGGTTCAGATCTATGTGCTTCTCTACAAGGAGGTTTCTCTAGCTTTGAAAATCAACAGCTTGTACAGTATGAGAAGACTGCTCAAAATTCATGAGAATGTGAGGGTACTGCGCTATCCCGATCATTTCGCCGCTCGTGTGTATTTATGGTCGCACCATGAAAAACTTGTAATTATTGATTACAAGATTTGCTATATTGGAGGATTAGATTTATGCTTTGGTCGATATGACACACCTGAACATGAAGTGGGTGACTGCCCTTCTGTAATATGGCCTGGAAAGGACTATTACAACCCAAGAGAATCTGAGCCAAATTCATGGGAAGACACCATGAGAGATGAATTGGATCGCAAGAAATATCCCCGTATGCCATGGCATGATGTCCATTGTGCTCTTTGGGGACCTCCCTGTCGTGACATTGCTCGGCACTTTGTTCAACGTTGGAACCATGCGAAGAGAACTAAAGCTCCAAATGAGCATGCAATTCCACTACTTATGCCTCACCATCACATGGTCATCCCTCATTACATGGGAAGAAGCAAAGAGATAGACATTgatgaaaagaaagatgaagaCAAGAGGAAAGAAATTGACATTCAGGATTCATTTTTCTCTGAGTCTCCAATGCAAGATATACCACTACTTATACCTCAAGAAGCTGATGGACCAGTTACTTCAAATGGAGATCATACAAATTTAAGTGAAAATTCTCCGTTATTGTCCCAAAAGCTCGGGCATGAAACTTTAGTTTCAGACTCCCATATGAAAGGGTTTCAAGATGAAGTTGTTCCTTTAAACTTGGGGGCACAATCTGTTGTCGATACTCTAGATGATTGGTGGGAAACACCAGAAGGCACAAATGATGACACTACTTTGGAATATGGACAAGTTGGTCCACATACTACCTGTCACTGTCAGGTAATCAGAAGTGTCAGCCAGTGGTCTGCTGGAACAAGTCAGCCTGAAGAAAGCATTCACACTGCATATTGTTCTCTTATTGAAAAAGCAAAGCATTTTATCTACATTGAGAACCAATTTTTCATATCAGGTCTAGCAGGGGATGACATAATACAGAACCGTATTTTGGAAGCACTATACAGGCGTATTTTGCAAGCCCACAAAGAACAGAAAGATTTTAGAGTTATAATTGTGATGCCTCTCTTGCCTGGCTTCCAGGGTGGTCTGGATGATGGTGGTGCTGCTACTGTGAGAGCCTTAACACATTGGCAGTATAGAACGATTTCTAAAGAACAGCACTCCATATTACACAATCTTGAAGCTAAACTTGGTCCTAAGACACATGATTATATTTCTTTCTATGGTCTAAGATCTCATGGTAGACTTTATGAAAATGGCCCTGTGGCTACAAGTCAGGTATATGTGCACAGTAAATTGATGATAATTGATGACCGTGTAGCTTTTATTGGATCATCTAATATAAATGACCGCAGTTTGCTTGGATTAAGAGACTCTGAGATCGGAGTGCTTATAGAAGACAAAGAATATGTTGAATCATTGATGAATGGAAAGCTATGGAAGGCTGGGAAATTTTCCTATAGCCTCCGCTGCTCCCTATGGTCTGAGCACCTTGGTCTTCATACTGGAGAGATCAGTAAAATCAGTGATCCGGTGGCAGATACAACCTACAAGGACTTGTGGTCAGCAACTGCAAAGGAAAATACTAGGATATACCATGAGGTCTTTGCTTGCATTCCCAACGATCAGATACACTCAAGAGCTGCACTTCGGCAAAGCATGGTTCAATGGAAAGAAAAACTTGGTCATACCACCATAGATTTGGGAATAGCCCCTGATAAGTTAGTCTGTCATGAGAAtggagaaataaaaacaatagacCCGATAGAGAGGTTGAAGTCTGTGAAGGGACATCTTGTTTCCTTTCCTTTGGAGTTCATGCGTGAGGAAGATCTAAGACCAGCTGTTATTGAGAGCGAGTTTTATGTTTCTCCTCAAGTATATCATTAA 3159 0.4036 MRRTGVIFEELPKATIVSVSRPETGDISPILLSYTIELQYKQFKWRLLKRASQVLYLQFALRKRAIIEDFHDKQEQVKEWLQYLGIVDQTVMEQDDEEPDDGPVPLHHEDSVKNRYVPSVAALSIIRPSLGGQQSIADRAKVTMQGYLNHFLGNLDIVNSQEVCKFLEVSKLSFLQEYGPKLKEGYVMVNHLSNISQDSDVSCFPCNWFHCCDNNQKKVWAVLKPGFLAFLDDPFNNKPLDIIIFDILPSSNGETKIYLADPIKEHNPLRYTFKVSSGNRSILLRTTSSAKVKAWVTAINEASLRPLEGWCCPHRFGSFAPIRGLTEDGSQAQWFVDGQAAFEAIATSIQDAKSEIFITGWWLCPELYLRRPFHSFSTSQLDSLLEEKAKQGVQIYVLLYKEVSLALKINSLYSMRRLLKIHENVRVLRYPDHFAARVYLWSHHEKLVIIDYKICYIGGLDLCFGRYDTPEHEVGDCPSVIWPGKDYYNPRESEPNSWEDTMRDELDRKKYPRMPWHDVHCALWGPPCRDIARHFVQRWNHAKRTKAPNEHAIPLLMPHHHMVIPHYMGRSKEIDIDEKKDEDKRKEIDIQDSFFSESPMQDIPLLIPQEADGPVTSNGDHTNLSENSPLLSQKLGHETLVSDSHMKGFQDEVVPLNLGAQSVVDTLDDWWETPEGTNDDTTLEYGQVGPHTTCHCQVIRSVSQWSAGTSQPEESIHTAYCSLIEKAKHFIYIENQFFISGLAGDDIIQNRILEALYRRILQAHKEQKDFRVIIVMPLLPGFQGGLDDGGAATVRALTHWQYRTISKEQHSILHNLEAKLGPKTHDYISFYGLRSHGRLYENGPVATSQVYVHSKLMIIDDRVAFIGSSNINDRSLLGLRDSEIGVLIEDKEYVESLMNGKLWKAGKFSYSLRCSLWSEHLGLHTGEISKISDPVADTTYKDLWSATAKENTRIYHEVFACIPNDQIHSRAALRQSMVQWKEKLGHTTIDLGIAPDKLVCHENGEIKTIDPIERLKSVKGHLVSFPLEFMREEDLRPAVIESEFYVSPQVYH 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1760 1052 CDD PH_PLD 158 302 - -
Ssu7g1760 1052 SMART PH_update 181 306 IPR001849 -
Ssu7g1760 1052 Gene3D - 181 305 IPR011993 -
Ssu7g1760 1052 Pfam PLD-like domain 721 895 IPR025202 -
Ssu7g1760 1052 Pfam Phospholipase D Active site motif 439 466 IPR001736 GO:0003824
Ssu7g1760 1052 Gene3D Endonuclease Chain A 325 562 - -
Ssu7g1760 1052 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 848 875 IPR001736 GO:0003824
Ssu7g1760 1052 SUPERFAMILY PH domain-like 213 307 - -
Ssu7g1760 1052 CDD PLDc_vPLD1_2_yPLD_like_1 332 477 - -
Ssu7g1760 1052 PIRSF PLD_euk 563 1052 IPR016555 GO:0004630|GO:0006654|GO:0048017
Ssu7g1760 1052 PIRSF PLD_euk 15 573 IPR016555 GO:0004630|GO:0006654|GO:0048017
Ssu7g1760 1052 MobiDBLite consensus disorder prediction 609 628 - -
Ssu7g1760 1052 PANTHER PHOSPHOLIPASE D ZETA 2 6 1049 - -
Ssu7g1760 1052 CDD PLDc_vPLD1_2_yPLD_like_2 708 892 - -
Ssu7g1760 1052 Gene3D Endonuclease Chain A 670 914 - -
Ssu7g1760 1052 SUPERFAMILY Phospholipase D/nuclease 293 559 - -
Ssu7g1760 1052 ProSiteProfiles PH domain profile. 180 304 IPR001849 -
Ssu7g1760 1052 PANTHER PHOSPHOLIPASE D 6 1049 IPR015679 -
Ssu7g1760 1052 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 439 466 IPR001736 GO:0003824
Ssu7g1760 1052 SUPERFAMILY Phospholipase D/nuclease 686 898 - -
Ssu7g1760 1052 SMART pld_4 848 875 IPR001736 GO:0003824
Ssu7g1760 1052 SMART pld_4 439 466 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1760 Ssu-Chr7 35980788 35990698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1760 7 1052 Phospholipase D Gene Family (Wang group) AT3G05630 65.690 0.0 1398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1760 K01115 - gmx:100796914 1981.07