Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1736 ATGGCGAGCGCGATGGTAGAGGACACGAGCTTCGAAGATGATCAGCTGACGAATATGACCACCGACGACATCGTTCGAGCTTCACGTCTTGTCGACAACGAGATTCGCATCCTCAAGGAAGAGTTGCAGAGGACTAATCTGGAATTGGAATCGTACAAGGACAAGATCAAGGAGAATCAGGAGAAGATTAAGCTCAATAAGCAGTTACCCTACCTCGTTGGCAACATTGTCGAGATATTGGAAATGAACCCAGAAGATGAAGCTGAAGAAGACGGTGCCAATATTGATCTTGACTCACAAAGGAAAGGAAAGTGTGTTGTGCTAAAGACATCTACTCGACAGACAATCTTTCTTCCTGTTGTTGGGCTTGTTGACCCTGACAAGTTAAAACCTGGTGATCTGGTTGGTGTTAACAAGGATAGTTACTTAATCTTGGATACCCTGCCGTCTGAGTATGATTCTAGAGTTAAGGCCATGGAGGTTGATGAAAAGCCAACAGAGGATTACAATGACATTGGTGGACTAGAGAAGCAGATCCAAGAATTAGTTGAAGCCATTGTTTTGCCCATGACCCACAAGGAGCGGTTCCAAAAGTTAGGAGTTCGTCCTCCCAAGGGAGTGCTGTTATATGGACCTCCAGGGACTGGGAAAACATTGATGGCCCGTGCCTGTGCGGCACAGACAAATGCCACTTTTCTGAAATTGGCAGGCCCTCAACTGGTCCAGATGTTCATAGGAGATGGAGCAAAACTTGTTCGTGATGCCTTTCAACTAGCAAAAGAGAAGTCACCATGCATCATATTTATAGATGAAATTGATGCAATTGGTACAAAGCGTTTTGATAGTGAAGTAAGTGGAGACAGAGAGGTACAACGAACAATGTTAGAATTGCTCAATCAGCTTGATGGTTTCAGTAGTGATGACCGGATTAAGGTGATAGCAGCAACCAACCGTGCTGATATTCTTGACCCTGCCCTTATGCGTTCTGGTCGATTGGATCGTAAAATTGAGTTTCCACACCCAAGTGAAGAAGCAAGAGCGCGAATTCTACAGATCCATTCAAGGAAGATGAATGTTCACCCAGATGTCAACTTTGAAGAACTTGCTCGATCCACAGATGATTTCAATGGAGCCCAACTGAAGGCTGTCTGTGTTGAGGCTGGCATGTTGGCTCTACGCCGCGATGCGACTGAGGTTTGCTTTCTTTCAGATATGCAACAACTTAAAAGTCTTAAACAtcgatttataaaaaaaattagtctagGAGATATTACTGGTCGACATTTCTGTTTGGAGCCTTTCTTATAA 1308 0.4365 MASAMVEDTSFEDDQLTNMTTDDIVRASRLVDNEIRILKEELQRTNLELESYKDKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPSEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVCFLSDMQQLKSLKHRFIKKISLGDITGRHFCLEPFL 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1736 435 Gene3D - 32 158 IPR012340 -
Ssu7g1736 435 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 42 401 IPR005937 GO:0005737|GO:0030163|GO:0036402
Ssu7g1736 435 Coils Coil 35 69 - -
Ssu7g1736 435 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 1 401 - -
Ssu7g1736 435 Gene3D - 342 414 - -
Ssu7g1736 435 Pfam AAA+ lid domain 362 400 IPR041569 -
Ssu7g1736 435 ProSitePatterns AAA-protein family signature. 310 328 IPR003960 GO:0005524|GO:0016887
Ssu7g1736 435 CDD AAA 173 339 - -
Ssu7g1736 435 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 398 IPR027417 -
Ssu7g1736 435 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 6A HOMOLOG A 1 401 - -
Ssu7g1736 435 Pfam ATPase family associated with various cellular activities (AAA) 207 339 IPR003959 GO:0005524|GO:0016887
Ssu7g1736 435 SMART AAA_5 203 342 IPR003593 -
Ssu7g1736 435 Pfam Proteasomal ATPase OB C-terminal domain 73 149 IPR032501 -
Ssu7g1736 435 Gene3D - 159 340 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1736 Ssu-Chr7 35699583 35702345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1736 148 394 Calmodulin-binding Proteins AT3G56690 39.286 4.90e-46 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1736 K03065 - gmx:100788486 774.237