Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1724 ATGGGAGTCAAAGCGAGAATCGTAACTGGTCTATTGGaactaaaacaaacaaagaaaataggGCCACATTGCCATGTCATTTGTGCGGTGCGCGAAACTCGAACCACCCTAAACGACGGCGCATTCAAAATTTCGCCACCGCCGCGGCATCATTTTCCGAACGATTATTCCCTTCAATTTCCCCTTCCAAGTTGCAACGACTCCCGAGTCGTGATGGCGGAAACGCGCGAAGCCACATCGAAAGAAACCGTTcgcgaagaagaagaagccgAGGAACAAAGTTTCGAAGAGCTCGGCGTGGACGCTCGTCTCCTTCGCGCCTTGCTGAAGAAGGGAATCGAGAAACCCACTCCAATTCAGCGCGTCGCGATTCCACTCATTTTGGAAGGTAAAGACGTGGTTGCTCGGGCGAAAACAGGTTCCGGAAAGACGTTCGCGTACCTTCTCCCGTTGCTTCAGAAATTGTTCACCGCGAATGCTGATCGGAAGAAGCTTGCGCCCAATGCTTTCATTCTGGTCCCTACTCGCGAACTGTCTCAACAGGTATATGCGGAAGTGTTGTCGCTGGTTGAGTTATGCAGAGTTCAACTGAAAGTTGTGCAGTTGAATAGCAATATGCGTGCCAATGACTTGCGGGCTGCATTGGCTGGACCTCCTGATGTTTTGATCTCCACACCTGCTTGCATAGCTAAGTGTTTGTCCAACGGCTGTACTTCAGGCTGCATCCATTAA 732 0.4795 MGVKARIVTGLLELKQTKKIGPHCHVICAVRETRTTLNDGAFKISPPPRHHFPNDYSLQFPLPSCNDSRVVMAETREATSKETVREEEEAEEQSFEELGVDARLLRALLKKGIEKPTPIQRVAIPLILEGKDVVARAKTGSGKTFAYLLPLLQKLFTANADRKKLAPNAFILVPTRELSQQVYAEVLSLVELCRVQLKVVQLNSNMRANDLRAALAGPPDVLISTPACIAKCLSNGCTSGCIH 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1724 243 Gene3D - 65 241 IPR027417 -
Ssu7g1724 243 SMART ultradead3 112 243 IPR014001 -
Ssu7g1724 243 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 76 234 - -
Ssu7g1724 243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 236 IPR027417 -
Ssu7g1724 243 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 93 121 IPR014014 GO:0003724
Ssu7g1724 243 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 124 243 IPR014001 -
Ssu7g1724 243 Pfam DEAD/DEAH box helicase 117 236 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1724 Ssu-Chr7 35554280 35555850 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1724 93 233 Eukaryotic Initiation Factors Gene Family AT3G13920 31.915 2.35e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1724 K14810 - gmx:100800749 268.085