Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1723 ATGGGAAATCATAAGGATGAGGTCATTCCTAAAAATGTTCAGCAATTCTGGATCTCATGTACTGCCCATGATAAGTTGCTTTACATCCTTGCTGTGTTGAAGTTGGGGTTGGTCCAAAAGAAAGTTCTGATATTCTCTAATACCATAGACATGAGTTTCAGATTGAAACTATTCTTGGAAAAGTTTGGTATCAGATCTGCTGTTTTAAATCCTGAATTGCCTCAGAATTCTCGTCTCCATATTCTTGAGGAATTCAACGCAGGCCTGTTTGATTATCTAATTGCAACAGATGTCAGCCAGTCAAAGGAGAAGGATGAAGCGCCTAAGGAAAATAATGTCGGATCACGGAAATCTAGAAAAcatgctaaaataaaattagattctGAATTTGGAGTTGTGAGGGGAATTGACTTCAAAAATGTATACACGGTTATAAACTTTGAAATGCCTCAAAATGTTGCGGGATATGTACATCGAATTGGACGTACAGGAAGAGCGTACAATTCTGGTGCTTCTGTTTCTCTGGTTTCTCAGGATGAAATGGACACTTTAGAAGAAATAAGATCTTTTGTTGGGGATGATGAAAACAACAGCACAAATTCCATTGCTGAGTTTCCCCTCCTCACCAAGAATGCAGTTGAATCTTTACGGTATAGGGCTGAGGATGTTGCTAAGAGTGTAACTAAAATTGCTGTCCGAGAGTTGAAAGCCCACTTTGAAACTAATCCAAGAGACCTAGATCTACTGAAGCATGACAAAGTTTTGAGCAAGAATGCCCCGCCTCCGCACCTACGTGATGTGCCTGACTACCTATTAGACAAACCAACGAAAGAGGCAAGGGAAATGGTCAAGCTTGCAAGGGATGCAATGGGAAATAATAATCGCCGCAGGGGATCCAAGAGAAAATCAAGAAAAGATGGAGACCCTCTGAAGGCTATCTCTGCTATGGTATCAAAAAGACCGCACAAAGTTAGGAAGACTGGTGCAAGCGATAGCAACAATAGCAGGGATAGACATAAtcgcaaaaagaaaaaggatattTGA 1044 0.3937 MGNHKDEVIPKNVQQFWISCTAHDKLLYILAVLKLGLVQKKVLIFSNTIDMSFRLKLFLEKFGIRSAVLNPELPQNSRLHILEEFNAGLFDYLIATDVSQSKEKDEAPKENNVGSRKSRKHAKIKLDSEFGVVRGIDFKNVYTVINFEMPQNVAGYVHRIGRTGRAYNSGASVSLVSQDEMDTLEEIRSFVGDDENNSTNSIAEFPLLTKNAVESLRYRAEDVAKSVTKIAVRELKAHFETNPRDLDLLKHDKVLSKNAPPPHLRDVPDYLLDKPTKEAREMVKLARDAMGNNNRRRGSKRKSRKDGDPLKAISAMVSKRPHKVRKTGASDSNNSRDRHNRKKKKDI 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1723 347 MobiDBLite consensus disorder prediction 101 120 - -
Ssu7g1723 347 PANTHER RNA HELICASE 13 321 - -
Ssu7g1723 347 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 31 213 IPR001650 -
Ssu7g1723 347 PANTHER ATP-DEPENDENT RNA HELICASE DDX56-RELATED 13 321 - -
Ssu7g1723 347 MobiDBLite consensus disorder prediction 286 347 - -
Ssu7g1723 347 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 192 IPR027417 -
Ssu7g1723 347 CDD SF2_C_DEAD 13 176 - -
Ssu7g1723 347 Pfam Helicase conserved C-terminal domain 24 167 IPR001650 -
Ssu7g1723 347 Gene3D - 2 206 IPR027417 -
Ssu7g1723 347 SMART helicmild6 53 167 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1723 Ssu-Chr7 35546420 35552928 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1723 5 207 Eukaryotic Initiation Factors Gene Family AT3G19760 26.214 2.51e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1723 K14810 - gmx:100800749 591.267