Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1721 ATGGCGGGCAGACTTGTCATCAGTGCCGGAGGAATGACCGGGACCAGGGTTACTTGGTGCCTACGGTACTCGGACTTTTCATTGGATGAAATTCAGAGGATATGTCCTGCTTGCCGGGGTATATGTAATTGCAAGACTTGCTTGCGGAGTGATAATTCGATAAAGGTTCGGATACGCGAGATACCTGTTCTAGATAAGTTACAGTATCTCCATGTGCTGCTGTCGTCGGTGCTTCCTGTGGTAAAGCAGATCCACTGTGAACAGTGTTTTGAAGTTGAGCTTGAAAAGAAGTTGCGTGGTGCTGAAATAGATCTTCCGAGGATAAAATTGAACACAGATGAGCAGATGTGCTGCAATTTCTGTAGGATACCTATTACTGATTATCATCGGCGCTGTCCAAATTGCTCATATGATTTGTGCCTTAATTGCTGTCGAGATCTTCGAGAAGCAACTGCAGATCGCAATAAAGAACCCCTAACAGAGCTAGCAAAAACTTCCCATCGAAACATATTAAGTAAATGTCCTCATTGGAGATCCAATGATAATGGAAGTATTCCCTGTCCCCCTAAGGAGTATGGTGGCTGTGGTTattcttcattaaatttaaGCCGAATTTTCAAGATGAACTGGGTTGCAAAGTTGGTGAAAAATGTAGAGGAAATGGTTAGTGGCTGCAGAATTAGTAATGCTGATGATCCACCAGAAACTGGGCTGAATGCTCTCAGACTTTGTCAATATTCTCATAGAGAAGCTAGTGatgataattatctttattGTCCAGCATCCGATGATATCAAAACCGATGGGATTGGCAATTTTAGAAAGCATTGGAAAACTGGTGAGCCCATTATTGTTAAGCAAGTGTTTGATGGGTCATCCATTTCAAGCTGGGATCCAATGGTCATATGGAGAGGGATTCTAGAGACAACagatgagaaaatgaaagatgaaAACAGAATGGTTAAGGCCATAGATTGCTTGGATGGGTCTGAGaTTGATATCGAGCTTGCTCAGTTCATGAAAGGATACTTTGAAGGGCTTATTCATGAAAATGGTTGGCCACAGTTATTGAAATTAAAGGATTGGCCTTCACCTAGCGCGTCTGAAGAATTTCTATTGTATCAAAGACCTGAGTTTATCAGCAAACTACCTTTACTTCAGTATATTCACTCCAAGTGGGGCCTTCTCAATGTTGCAGCTAAATTGCCTCATTACTCCTTGCAGAATGATGTAGGACCCAAGATATATATATCTTATGGGATTAGTGATGAACTTGGTAGAGGTGATTCAGTGACAAATCTCCACTTCAATATGCGTGACATGGTGTACCTTTTGGTTCATACAAATAAAGTAAAGCTGAAGGACTGGCagagaactaaaattgaaatgatGCAAAAAGCTAAAGTTTATAAGGAATCTGAGGCAAAAGAATCATGTGGGGATCCTCAAATATCTTCAAGGGGGAGTTCACCTGATTCATCACTTGGTACAAAAAGTAGTGGACTGGATATGGATTCAAACCAGAATAAGTCAATTATGGATCAAGGGTTTGAAATTTATTCTATTGCTGAAGGTAATATGGTCAATTGTAAACTTCCGGTCACACAAAATGGAGATGTCACTGAGAAAACACATCCTGGAGTTCTTTGGGATGTTTTTCGTCGTCAAGATGTTCCAATATTgactaaatatttgaaaatacattGGAAGGAATTTGGGAAGTCAGATGATGTTGCATGGCCTCTTTATGATGGAGCTATTTTTCTTGACAAACACCATAAAAGAAAGTTGAAGGAAGAATTCGGAGTGGAGCCTTGGTCATTTGAACAGAATTTGGGGGAAGCTATATTTGTTCCTGCTGGTTGCCCTTTTCAAGCAAGGAATGTTCAGTCCAATGTTCAGTTGGGCCTTGATTTCTTATCTCCGGAAAGCCTGGGTGATGCTGTAAGATTGGCAGAGGAAATCCGTTGTCTACCCAATGAACATGAAGCAAAGCCTCAAGTATTGGAGGTTGGGAAGATATCTCTTTATGCAGCAAGTTCAGCCATCAAAGAAGTTCAGAAACTTGTACTTGACCAGAAACTTGGCGCAGAGATCGGATATGGAGACCCTAATTTGACTGCAATGGTTTCTGAGAATTATGAGAAGATGGTTAAGCGGAGGCAGATTACTTGTGCTTGA 2181 0.3989 MAGRLVISAGGMTGTRVTWCLRYSDFSLDEIQRICPACRGICNCKTCLRSDNSIKVRIREIPVLDKLQYLHVLLSSVLPVVKQIHCEQCFEVELEKKLRGAEIDLPRIKLNTDEQMCCNFCRIPITDYHRRCPNCSYDLCLNCCRDLREATADRNKEPLTELAKTSHRNILSKCPHWRSNDNGSIPCPPKEYGGCGYSSLNLSRIFKMNWVAKLVKNVEEMVSGCRISNADDPPETGLNALRLCQYSHREASDDNYLYCPASDDIKTDGIGNFRKHWKTGEPIIVKQVFDGSSISSWDPMVIWRGILETTDEKMKDENRMVKAIDCLDGSEIDIELAQFMKGYFEGLIHENGWPQLLKLKDWPSPSASEEFLLYQRPEFISKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISYGISDELGRGDSVTNLHFNMRDMVYLLVHTNKVKLKDWQRTKIEMMQKAKVYKESEAKESCGDPQISSRGSSPDSSLGTKSSGLDMDSNQNKSIMDQGFEIYSIAEGNMVNCKLPVTQNGDVTEKTHPGVLWDVFRRQDVPILTKYLKIHWKEFGKSDDVAWPLYDGAIFLDKHHKRKLKEEFGVEPWSFEQNLGEAIFVPAGCPFQARNVQSNVQLGLDFLSPESLGDAVRLAEEIRCLPNEHEAKPQVLEVGKISLYAASSAIKEVQKLVLDQKLGAEIGYGDPNLTAMVSENYEKMVKRRQITCA 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1721 726 SMART cupin_9 372 656 IPR003347 -
Ssu7g1721 726 MobiDBLite consensus disorder prediction 472 507 - -
Ssu7g1721 726 Pfam JmjC domain, hydroxylase 548 635 IPR003347 -
Ssu7g1721 726 Gene3D Cupin 253 665 - -
Ssu7g1721 726 MobiDBLite consensus disorder prediction 479 507 - -
Ssu7g1721 726 ProSiteProfiles JmjC domain profile. 365 656 IPR003347 -
Ssu7g1721 726 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 22 689 IPR045109 GO:0032454|GO:0033169
Ssu7g1721 726 SUPERFAMILY Clavaminate synthase-like 274 658 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1721 Ssu-Chr7 35535769 35542151 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Ssu7g1721 JmjC 6.3e-07 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1721 K15601 - gmx:100801287 1358.2