Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1719 ATGTCAAACATCACACGTTGTGATAGTGGGAGCTTCTCTACAGAGAATACCAGAGAAGATGCAGCTAAACAATCTGAGATTCTTGGTCAGTTCCATAGTCCACATTCTCATacctcaaccacaacaacaaataATAGCAATGGTTCCAACACAAATTCACAACCACCTGCACCTGTTAAGAAGAAAAGGAGCCTACCAGGAAATCCAGATCCAAGTGCTGAAGTTATAGCTCTGTCACCAAACACACTAATGGCCACTAACCGGTTCATATGTGAAATCTGCAACAAAGGGTTTCAAAGGGATCAAAACCTTCAGTTGCACCGGCGAGGCCACAACTTGCCATGGAAGCTTAAACAGAGAACCAGCACAGAAGTTCGAAAGCGGGTTTATGTTTGTCCAGAACCTTCGTGCGTCCACCACAACCCAACAAGAGCACTTGGTGATCTCACTGGCATTAAAAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGATAAGTGCTCAAAGAAATACGCCGTTCAGTCTGACTGGAAAGCCCATTCAAAAATTTGCGGTACAAGGGAATACAAATGTGACTGTGGAACCATCTTTTCCAGAAGAGATAGCTTCATTACGCACAGAGCTTTCTGCGACGCGCTGGCTGAGGAGAACAACAAAGCCAACGAAGGACAATTGTCAAAGATGGGTCCAAACTTGCAATGCCAGCCAATGCCAAACCTCGTTTCCTCATTACCAATCAACACAACTGTTCCCAACCCACAAATCGGTGGCACCTCGGAGTTCAACCATTCTGATCTCAAGCACCCTCTATCACTCCCACACGAGCTCATGCCAATGCCTGCACCAAAACCACCCTTCAACAACAACATGGCCGCAGGAACACTGTTCACGAGAACCCTTTCGTCCAcctcctctccctctcttcaaCTAAGCTCAAACATGTTCGAGGAAAACGGGCTCCACCTGGCCGCGGGGTCGCCGCACATGTCGGCCACGGCACTGCTGCAAAAAGCCGCGCAAATGGGAGCGACGGTGACAGAAAAAACCTTCGCCACAAACATGGCACCGCCAACGTTTGGTGTGCTGCAACAGCAACCAAATGGACAACCCTTCGTGAACCAGTACATGCACGGTGGCCAACAGGATGTCAACATTGCTGCTCAGTATAATAATTTCGGTGCAAACGGGATGGCGGGAGGGAGCGTTGGGATGAACGGTGTGGATATGTTCAACGCTATTTTGGATCAAAGCAAGGCTCTGTCGAAGATCATAGAGCAAAACAGTCGAAGCAGTGGTGGAGGACCAACGAACGGAGGGTCGAGTAGTGCCATCAACGTTGGTGGAAGTAAAGGAAGTGGGGATGTGTTGACTCTGGACTTTTTGGGAATAGGAGGAGGTGGGGGTGGGGGTGCGGGTGGTGCACATGGAAATTTCTATGGTGGTGCTCAACAAGGGGAAACCGGTGCACCGGATGAGGTCTGGAGAAATTGGTCTAGTAAGAACGCAGCAGGGTTTGAATCATTTTCAGCAACGAGCAGCATTTGA 1554 0.4768 MSNITRCDSGSFSTENTREDAAKQSEILGQFHSPHSHTSTTTTNNSNGSNTNSQPPAPVKKKRSLPGNPDPSAEVIALSPNTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSTEVRKRVYVCPEPSCVHHNPTRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKANEGQLSKMGPNLQCQPMPNLVSSLPINTTVPNPQIGGTSEFNHSDLKHPLSLPHELMPMPAPKPPFNNNMAAGTLFTRTLSSTSSPSLQLSSNMFEENGLHLAAGSPHMSATALLQKAAQMGATVTEKTFATNMAPPTFGVLQQQPNGQPFVNQYMHGGQQDVNIAAQYNNFGANGMAGGSVGMNGVDMFNAILDQSKALSKIIEQNSRSSGGGPTNGGSSSAINVGGSKGSGDVLTLDFLGIGGGGGGGAGGAHGNFYGGAQQGETGAPDEVWRNWSSKNAAGFESFSATSSI 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1719 517 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 3 468 - -
Ssu7g1719 517 MobiDBLite consensus disorder prediction 29 58 - -
Ssu7g1719 517 Pfam Zinc-finger double-stranded RNA-binding 89 111 IPR022755 -
Ssu7g1719 517 Gene3D Classic Zinc Finger 68 135 - -
Ssu7g1719 517 MobiDBLite consensus disorder prediction 430 449 - -
Ssu7g1719 517 MobiDBLite consensus disorder prediction 1 18 - -
Ssu7g1719 517 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Ssu7g1719 517 SUPERFAMILY beta-beta-alpha zinc fingers 88 185 IPR036236 -
Ssu7g1719 517 MobiDBLite consensus disorder prediction 1 73 - -
Ssu7g1719 517 SMART c2h2final6 89 111 IPR013087 -
Ssu7g1719 517 SMART c2h2final6 165 185 IPR013087 -
Ssu7g1719 517 SMART c2h2final6 130 160 IPR013087 -
Ssu7g1719 517 Gene3D Classic Zinc Finger 143 223 - -
Ssu7g1719 517 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 111 IPR013087 -
Ssu7g1719 517 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1719 Ssu-Chr7 35526044 35529504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1719 46 346 IDZ Gene Family AT3G50700 57.538 4.14e-120 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu7g1719 zf-C2H2_jaz 7.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1719 - - gmx:100813556 862.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1719 7 35526044 35529504 Ssu7g1719 7 35526044 35529504 ECH
Ssu7g1719 7 35526044 35529504 Ssu4g1285 4 20969057 20972351 PCT