Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1716 ATGGATCAGGAGGAGCAAGATAGAGCGTTGCCCATTGCAAATGTGGGTCGAATCATGAAGCAAATTCTTCCTCCTAGTGCAAAGATCTCCAAAGAAGGGAGACAACTAATGCAAGAGTGTGTGACAGAGTTCATAAGTTTTGTGACTGGCGAGGCGTCTGACAAGTGTCACAAGGAGAATCGCAAGACCGTTAACGGGGATGACATCTGTTGGGCTCTAAGCTCCTTAGGGTTTGACAACTATGCTGAGGCCATAGGAAGGTACTTGTATAAATACAGGCAAGctgaaagggagaaaatgaatCAGAACAGGCTTGATACTACCAAACAAAAGTATGAAGAAGGATCATCAGCAACAAAAACTCAGAAGCAAACTCAAATCCGTGCTCCACCACCACTAGGGTCTAGGGTTACTGACAAGGTTGAAAACCCTCCTGCTATAAATCAATCtggatga 456 0.4232 MDQEEQDRALPIANVGRIMKQILPPSAKISKEGRQLMQECVTEFISFVTGEASDKCHKENRKTVNGDDICWALSSLGFDNYAEAIGRYLYKYRQAEREKMNQNRLDTTKQKYEEGSSATKTQKQTQIRAPPPLGSRVTDKVENPPAINQSG 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1716 151 MobiDBLite consensus disorder prediction 99 113 - -
Ssu7g1716 151 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-4 1 126 - -
Ssu7g1716 151 MobiDBLite consensus disorder prediction 114 131 - -
Ssu7g1716 151 MobiDBLite consensus disorder prediction 99 151 - -
Ssu7g1716 151 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 9 73 IPR003958 -
Ssu7g1716 151 SUPERFAMILY Histone-fold 6 110 IPR009072 GO:0046982
Ssu7g1716 151 Gene3D Histone, subunit A 1 130 IPR009072 GO:0046982
Ssu7g1716 151 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 126 IPR027113 GO:0001228|GO:0006355|GO:0016602
Ssu7g1716 151 PRINTS CCAAT-binding transcription factor subunit A signature 37 55 - -
Ssu7g1716 151 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Ssu7g1716 151 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Ssu7g1716 151 ProSitePatterns NF-YB/HAP3 subunit signature. 40 56 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1716 Ssu-Chr7 35435109 35435564 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1716 5 129 CCAAT-HAP3 Transcription Factor Family AT1G09030 62.400 7.30e-56 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Ssu7g1716 CBFD_NFYB_HMF 4.7e-25 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1716 K08065 - gmx:100791116 218.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1716 7 35435109 35435564 Ssu7g1716 7 35435109 35435564 ECH