Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1713 ATGGGCTGGCAGGGGCGCACAATTTTACTGCGCAGCGGTGAATTATCGATCGCGAAGTTTCCGTTAAAAGTTTTTGAGTTTCGAGTTTTGCAATTAGAGTGTGTGATTTTGATCGCGGAGAAGGTATATTACACTGCATGCGTGAGTGTTGAGTCCTCTGTTGTGTTTTGGAGGATCCCTGTGGTAAATTGTTCCgattgttggtggtggtggagttTAGCGGTTTTGGAGTTGAGGAGTGTTCTGAGTTTTGGTGTGGTTGAAATTTCGGGTGTGGAAATGTTTGGGGCGGGTAGAGGTGCCGGAAGCGGTGGAGTTGCGGGGCCCGTTTTGATTCCGAAGCGTTTTGTTTGGCCTCATGGAGGGAGAAGGGTGTTTCTAAGTGGTTCTTTCACCAGGTGGTCGGTATTTATACCTATGTCACCGATGGAAGGATGCCCAACTGTATTTCAAGTTATTTGCAGCTTAACGCCAGGATATCATCAGTACAAATTTAATGTGGATGGTGAGTGGCGGCATGACGAGCATCAGCCACTTGTAAGGGGGGACTATGGGATAGTGAATACTATTTATTTAGTGAGAGAACCAGATATTTTGCCTCCTATCTTAAATGCTGAAACACCTGGTCGATCCCACATGGAGGTTGACAATGATGTCTTTGGACACGTTGAAGCTAGTCCAAGGATGTCAGAGTCTGATCTGCAGGTCTCTCGACACCGTATATCTATATTCTTGTCTACAGATACTGCTTATGAGTTGCTTCCCGAGTCAGGCAAGgtTATTGCCTTGGATATAACTTTACCCGTTAAGCAAGCATTCCATGCTCTTTATCAAGAGGGAATATCTATGGCTCCTGTATGGGATTCTAGCAAGTGCCAGTTTGTTGGAATGCTTAGTGCAATGGACTTCATTCTAATACTGAAAGAGATGGGGAATCTTGGATCTAACTTGACTGAAGAACAGCTTGAGACACATACTATAGCAGCATGGAGAGAGGAAAAGGGACAAGAATGCAGAACTGATAGTAATGGGAGAACATACCCTCAACATTTAGTTCATGCTGGGCCCCATGAGTGTCTAAAAGATGttgctttaaaattttacaaaacaagGTGA 1116 0.4292 MGWQGRTILLRSGELSIAKFPLKVFEFRVLQLECVILIAEKVYYTACVSVESSVVFWRIPVVNCSDCWWWWSLAVLELRSVLSFGVVEISGVEMFGAGRGAGSGGVAGPVLIPKRFVWPHGGRRVFLSGSFTRWSVFIPMSPMEGCPTVFQVICSLTPGYHQYKFNVDGEWRHDEHQPLVRGDYGIVNTIYLVREPDILPPILNAETPGRSHMEVDNDVFGHVEASPRMSESDLQVSRHRISIFLSTDTAYELLPESGKVIALDITLPVKQAFHALYQEGISMAPVWDSSKCQFVGMLSAMDFILILKEMGNLGSNLTEEQLETHTIAAWREEKGQECRTDSNGRTYPQHLVHAGPHECLKDVALKFYKTR 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1713 371 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 102 369 - -
Ssu7g1713 371 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 102 369 - -
Ssu7g1713 371 Gene3D Immunoglobulins 110 194 IPR013783 -
Ssu7g1713 371 ProSiteProfiles CBS domain profile. 253 315 IPR000644 -
Ssu7g1713 371 Pfam Glycogen recognition site of AMP-activated protein kinase 112 197 IPR032640 -
Ssu7g1713 371 SUPERFAMILY E set domains 112 194 IPR014756 -
Ssu7g1713 371 CDD E_set_AMPKbeta_like_N 115 193 - -
Ssu7g1713 371 SUPERFAMILY CBS-domain pair 239 371 IPR046342 -
Ssu7g1713 371 Gene3D - 230 371 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1713 Ssu-Chr7 35351280 35360958 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1713 116 203 Protein tyrosine phosphatase (PTP) family AT3G01510 35.556 9.25e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1713 - - gmx:100790062 510.375