Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1685 ATGGATCATCAAGGGCATGGACATGGCCAGAACCCATCTATGGGGGTTGTTGGTAGTGGACCTCAACTTACTTATGGTTCTAATCCGTACCAAGCCAGCCATATAACAGGTTCACCTGGGATGCTTGTTGCATCACCTGGGACCATTCAATCCACTGGTCAACCAGCTGCAACTCAGCTGGGACAACATCAACTTGCTTATCAGCACCTTCACCAGCAACAACAGCAGCAACTCCAGCAACGGCTCCAAGCCTTTTGGGCAAATCAATATCAAGAAATTGAGAGGGTAACTGATTTCAAGAACCACAGCCTTCCCTTGGCAAGGATCAAAAAGATTATGAAGGCTGATGAGGATGTTAGGATGATATCAGCTGAGGCACCAGTCATATTTGCAAGGGCATGTGAAATGTTCATATTGGAGTTAACCTTGCGTTCTTGGAATCACACTGAGGAGAACAAAAGGAGAACCcttcaaaaaaatgatattgcaGCAGCCATCACGAGAACTGATATCTTTGATTTTTTGGTTGACATTGTGCCTCGGGAGGACTTGAAAGATGAAGTGCTTGCATCAATACCAAGAGGAACAGTGCCTGTTACAGGGCCTGCTGAGGCACTTCCTTATTGCTATTTGCCACCTCAACATGCACAGCAAGTTGGAGCTGCCAGTGTCATGATGGCTAATAAGCCTGTGATGGACCCATATGCTCAACAATCTCATCCCTACAACATGGCACCACAAATGTGGCCACAACCACCAGAGCAGCAACAATCATCTCCAGATCATTAG 789 0.455 MDHQGHGHGQNPSMGVVGSGPQLTYGSNPYQASHITGSPGMLVASPGTIQSTGQPAATQLGQHQLAYQHLHQQQQQQLQQRLQAFWANQYQEIERVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTVPVTGPAEALPYCYLPPQHAQQVGAASVMMANKPVMDPYAQQSHPYNMAPQMWPQPPEQQQSSPDH 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1685 262 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 262 - -
Ssu7g1685 262 MobiDBLite consensus disorder prediction 1 57 - -
Ssu7g1685 262 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 262 - -
Ssu7g1685 262 Gene3D Histone, subunit A 65 181 IPR009072 GO:0046982
Ssu7g1685 262 MobiDBLite consensus disorder prediction 15 35 - -
Ssu7g1685 262 MobiDBLite consensus disorder prediction 43 57 - -
Ssu7g1685 262 SUPERFAMILY Histone-fold 69 175 IPR009072 GO:0046982
Ssu7g1685 262 MobiDBLite consensus disorder prediction 236 262 - -
Ssu7g1685 262 Pfam Core histone H2A/H2B/H3/H4 64 166 IPR007125 GO:0003677
Ssu7g1685 262 MobiDBLite consensus disorder prediction 240 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1685 Ssu-Chr7 34863345 34864133 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1685 1 228 CCAAT-HAP5 Transcription Factor Family AT1G08970 61.572 4.03e-82 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Ssu7g1685 CBFD_NFYB_HMF 5.8e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1685 K08066 - gmx:100785287 436.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1685 7 34863345 34864133 Ssu7g1685 7 34863345 34864133 ECH
Ssu4g0347 4 5724824 5725603 Ssu7g1685 7 34863345 34864133 PCT