Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1679 ATGGCCATCATAATCGTGATCCTCATCGCCGCGCTCTTCCTCATGGGCTTCTTCTCCGTCTACATCCGGCACTGCGCGGACTCGCCCTCGAGCAGCATCCGCAACCTCGCCGGCGTCGGCGGCCGCTCCCGGCGAGCGGCGCGCGGGCTCGACCCGGAGGTGATCGCGACGTTCCCGACGCTGGAGTACTCGGTGGTGAAGATCCACAATGTCGGAAAGGGCACGCTGGAGTGCGCGGTGTGCCTGTGCGAGTTCGAGGAGACCGAAACGCTGCGTTTGATACCCAAGTGCGACCACGTGTTCCACCCGGACTGCATCGACGAGTGGCTCGCCTCCCACACCACCTGCCCCGTCTGCCGCGCCAACCTCGTCCCCCAGCCCGGAGACGCCCCAAGGGGAATCCCGATCCTCAACGGCCACGATGTCGAGGCCCAAAGCGAGGCCCAGCACGACGCCGTCGGGCCCGCTCCCCAACAGAAACAGCCTCAAGTGATCTCCGCAGAACCCCAGCCCCAGGTGCTGAGCCTGAACCAGACGCTGAACCGGAACCGCACGAGAGGCTCGCGGTCGGGCCGGCCGCGCTGGTTCCCGCGGTCTCACTCGACCGGTCACTCGCTGGTCCAACCGGGGGAAGACACTGAGCGGTTCACTCTCAGGCTGCCCGAGGAAGTGAGGAAGCAGATACTGCTGAACCCGGAATTGCATCGGGCGAGGAGCTTGGTTATCTTGCCTAGGGAGAGCAGTTCGCGGCGGGGGTATCGAACCGGCGAGGGAAGCAGCAGAGGGAGGTCTTCGAGGCGGTTGGACCGCGGGTTTAAGTCGGACCGGTGGGTTTTCACGATGGCGCCGCCGTTCTTGGTGAGAGCGTCCTCGATTAGGTCGCCGAGGGTGGCCAATAACGCCGGGGAAGGAACGTCCGTTCCTGCGCCTTTGCCGCCGCCGCCTGCTGTGGAATCGGTTTGA 963 0.6542 MAIIIVILIAALFLMGFFSVYIRHCADSPSSSIRNLAGVGGRSRRAARGLDPEVIATFPTLEYSVVKIHNVGKGTLECAVCLCEFEETETLRLIPKCDHVFHPDCIDEWLASHTTCPVCRANLVPQPGDAPRGIPILNGHDVEAQSEAQHDAVGPAPQQKQPQVISAEPQPQVLSLNQTLNRNRTRGSRSGRPRWFPRSHSTGHSLVQPGEDTERFTLRLPEEVRKQILLNPELHRARSLVILPRESSSRRGYRTGEGSSRGRSSRRLDRGFKSDRWVFTMAPPFLVRASSIRSPRVANNAGEGTSVPAPLPPPPAVESV 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1679 320 Pfam Ring finger domain 77 120 IPR001841 -
Ssu7g1679 320 ProSiteProfiles Zinc finger RING-type profile. 78 120 IPR001841 -
Ssu7g1679 320 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 266 - -
Ssu7g1679 320 MobiDBLite consensus disorder prediction 297 320 - -
Ssu7g1679 320 PANTHER RING FINGER DOMAIN-CONTAINING 1 266 - -
Ssu7g1679 320 SMART ring_2 78 119 IPR001841 -
Ssu7g1679 320 MobiDBLite consensus disorder prediction 144 213 - -
Ssu7g1679 320 SUPERFAMILY RING/U-box 74 133 - -
Ssu7g1679 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 125 IPR013083 -
Ssu7g1679 320 MobiDBLite consensus disorder prediction 159 186 - -
Ssu7g1679 320 CDD RING-H2_EL5_like 77 120 - -
Ssu7g1679 320 MobiDBLite consensus disorder prediction 250 267 - -
Ssu7g1679 320 MobiDBLite consensus disorder prediction 247 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1679 Ssu-Chr7 34811691 34812653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1679 1 307 Rapid Response to Elicitors AT3G05200 45.665 6.22e-84 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1679 K10664 - gmx:100810865 470.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1679 7 34811691 34812653 Ssu7g1679 7 34811691 34812653 ECH
Ssu4g0340 4 5653098 5654174 Ssu7g1679 7 34811691 34812653 PCT