Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1678 ATGTGTTTGCCTGAGGGAGAGAGAGACAGGGAGAGAGCCATGGCACTAGAAGCAGTGGTATTTCCACAATCACAAGACCCCTTTGGTGGTTACGGATCAGTGAAGGACTTCTACAACTGCACCTTCTTGGCCGGTACTTCACCCAACTGGGGGGACTATGAACAcatcaacatcaacatcaacaaaGAAGAAGAGCAAGGTCCTGCTATCTCTACTTTTCTCGATAATAATAACCAACCGGAGAATTACCCTTATGGAGATTGGACCACCAGCTCCTCCTCATCAATGTTACCCCACTTGAATGAACTTCAAGAAACCACTGACCCCAGTAACACTCACAACTTAGATAGCTTAACCACTCGTCCCAAGAGGCGCAGAGCCAAAAGCAGAAAGAACAAAGAAGAAATTGAGAACCAAAGAATGACTCACATTGCTGTGGAGCGCAATAGAAGAAAGCAGATGAATGAGTATCTTTCTGTTCTTCGCTCTCTAATGCCAGACTCTTATATCCAAAGGGGTGATCAAGCTTCTATAATTGGAGGTGCTATTAACTTTGTTAAGGAGCTTGAGCAAAGGCTGCATTTTCTTGGTGCTCAGAAAGAAGGAGAGGGGAAATCTGATGCTGATGGTGCAACAAACATGCCCTTTTCCGAGTTCTTTACCTTTCCCCAGTATTCAACAGGGGGTGGTGGCTCTGATAATAATTCTGCAGCCATAGGTGAGGACGTGGGTGAGGTTCAGTCTGGCATTGCTGACATAGAAGTGACCATGGTGGAAAGCCACGCAAATCTCAAAATAAGATCCAAGAAGCGCCCCAGGCAGCTCTTGAAGTTGGTCTCTGGTTTGCATACCATGCGCCTCACAATCTTGCACCTAAATGTTACTACCACCGGTGAAGTTGTTCTCTACTCCCTCAGTGTTAAGGCAGAAGATGATTGCAAGTTGGGATCAGTTGATGATATAGCAGCAGCTGTGTACCAGATGCTGGATAGGATTCAGCAAGAGGCAGTGTTGAATTAA 1020 0.45 MCLPEGERDRERAMALEAVVFPQSQDPFGGYGSVKDFYNCTFLAGTSPNWGDYEHINININKEEEQGPAISTFLDNNNQPENYPYGDWTTSSSSSMLPHLNELQETTDPSNTHNLDSLTTRPKRRRAKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIIGGAINFVKELEQRLHFLGAQKEGEGKSDADGATNMPFSEFFTFPQYSTGGGGSDNNSAAIGEDVGEVQSGIADIEVTMVESHANLKIRSKKRPRQLLKLVSGLHTMRLTILHLNVTTTGEVVLYSLSVKAEDDCKLGSVDDIAAAVYQMLDRIQQEAVLN 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1678 339 Pfam Helix-loop-helix DNA-binding domain 139 190 IPR011598 GO:0046983
Ssu7g1678 339 Gene3D - 123 203 IPR036638 GO:0046983
Ssu7g1678 339 MobiDBLite consensus disorder prediction 104 135 - -
Ssu7g1678 339 PANTHER MAX DIMERIZATION, MAD 14 339 - -
Ssu7g1678 339 SMART finulus 144 195 IPR011598 GO:0046983
Ssu7g1678 339 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 138 201 IPR036638 GO:0046983
Ssu7g1678 339 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 138 189 IPR011598 GO:0046983
Ssu7g1678 339 CDD bHLH_AtFAMA_like 141 213 - -
Ssu7g1678 339 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 14 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1678 Ssu-Chr7 34739117 34740360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1678 14 308 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 48.553 5.98e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu7g1678 HLH 8.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1678 - - pvu:PHAVU_007G181900g 583.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1678 7 34739117 34740360 Ssu7g1678 7 34739117 34740360 ECH
Ssu4g0338 4 5580717 5582211 Ssu7g1678 7 34739117 34740360 PCT