Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1667 ATGGCCAATCACAAACCAGATTATTGTTTATGGGATCAGAAAAAATGTCAAGCTAATAAATCGAAGAAGGTTACAATTGCCGAAGCTTTAAATATTAAACCCAAGAGACAAACGTCTTTGTTTTCTTGCTCATCTTCTGCCCATGACTTGAGGCATTTGGAAttggagaaagaaaaggaagatgagGCATCACCAAGGGGAGTCTTAGAAGCCTGCATGAAAGACTTTGACTCTCAGCCTTCACCTGATCAATCGGAAACCACTTGTTCAAGCATGAGGGCACGCTCTCACTGGACCaattttttcaaacttttgaagaaaaaatcttttaagcGCCTAGGGTCCCTCCCTCCTCTTAGTGTGCCAAAGATACCAAAGTGGAAAAGCAAAAGCAGTAGAGAAAATCAAGTTCTGAGTGAGCTATGCAACTTCAGGTCTTCTTTGGTGACTTTCAGCCTCTCTGACCTCAGAAATGCGACCAACAATTTTAGCAATGAGAATTTAATTGGAAGAGGTGGTTTTGCTGAGGTTTACAAGGGGTGTCTCGAAGATGGGCAATTAATAGCTGTGAAGAAATTGACTAAAGGAACCACAGATGAAAAGACCGCAGGCTTTCTATCTGAGCTAGGCGTAATTGCTCATGTTGACCATCCGAATACTGCCAAGCTAATTGGATGTTGTGTAGAAGGAGAAATGCAACTTGTCTTTGAACTGTCTCCACTGGGAAGTTTAGGATCTCTTCTTCATGGTTCAGATAAAACCAAATTAGACTGGAGTAAAAGGTGTAAAATTGCTCTGGGAATAGCTGATGGTCTCCTCTATCTGCATGAGAATTGTCACAGGCGAATCATTCATAGAGATATTAAGGCAGAGAATATTCTGCTCACGGAGAATTTTGAGCCACAGatttgtgattttgggcttgcgAAGTGGTTACCAGAACAATGGACTCAccataatatatcaaaatttgaagGCACATTTGGCTATTTTGCTCCTGAATATTTCATGCATGGTATAGTAGATGAGAAAACTGATGTTTATTCATTTGGGGTCCTACTTTTGGAGATTATAACTGGGCGTCCAGCTGTGAATCATTTGCAGCAGAACATTGTGATATGGGCAAAACCTTTGCTTGACGCTAATCATATCAAGGACCTCGTTGATCCTTCTCTTGGCGATAATTATGACCGAGAAAAGATGGGTTGTGTAGTTTTGACTGCATCACTGTGTGTTGAGCACTCTCCTATCTTACGGCCCCGCATGAGTCAGGTTGTGACACTGCTTAGAGGTGAAGACCATGTTCTGAAATCTACAAAAGCCAGCCGAAGGAGGCCTATACAAAGAACATACTCAGAAGAGCTACTGGACGCGCAAGAATACAACTCAACAAAATATCTAAGAGATCTCAACCGACATAGGCAGGTTGCACTGGGTTCTTGA 1443 0.3957 MANHKPDYCLWDQKKCQANKSKKVTIAEALNIKPKRQTSLFSCSSSAHDLRHLELEKEKEDEASPRGVLEACMKDFDSQPSPDQSETTCSSMRARSHWTNFFKLLKKKSFKRLGSLPPLSVPKIPKWKSKSSRENQVLSELCNFRSSLVTFSLSDLRNATNNFSNENLIGRGGFAEVYKGCLEDGQLIAVKKLTKGTTDEKTAGFLSELGVIAHVDHPNTAKLIGCCVEGEMQLVFELSPLGSLGSLLHGSDKTKLDWSKRCKIALGIADGLLYLHENCHRRIIHRDIKAENILLTENFEPQICDFGLAKWLPEQWTHHNISKFEGTFGYFAPEYFMHGIVDEKTDVYSFGVLLLEIITGRPAVNHLQQNIVIWAKPLLDANHIKDLVDPSLGDNYDREKMGCVVLTASLCVEHSPILRPRMSQVVTLLRGEDHVLKSTKASRRRPIQRTYSEELLDAQEYNSTKYLRDLNRHRQVALGS 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1667 480 ProSitePatterns Serine/Threonine protein kinases active-site signature. 283 295 IPR008271 GO:0004672|GO:0006468
Ssu7g1667 480 ProSitePatterns Protein kinases ATP-binding region signature. 169 192 IPR017441 GO:0005524
Ssu7g1667 480 Gene3D Transferase(Phosphotransferase) domain 1 240 453 - -
Ssu7g1667 480 Pfam Protein tyrosine and serine/threonine kinase 166 372 IPR001245 GO:0004672|GO:0006468
Ssu7g1667 480 Gene3D Phosphorylase Kinase; domain 1 124 237 - -
Ssu7g1667 480 ProSiteProfiles Protein kinase domain profile. 163 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g1667 480 PANTHER OS08G0249100 PROTEIN 40 475 - -
Ssu7g1667 480 SUPERFAMILY Protein kinase-like (PK-like) 151 459 IPR011009 -
Ssu7g1667 480 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 40 475 - -
Ssu7g1667 480 SMART serkin_6 163 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1667 Ssu-Chr7 34644676 34647393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1667 127 449 Receptor kinase-like Gene Family AT1G53420 42.943 1.71e-75 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Ssu7g1667 PK_Tyr_Ser-Thr 2.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1667 - - gmx:100781529 825.469
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0321 4 5334158 5337612 Ssu7g1667 7 34644676 34647393 ECH
Ssu7g2062 7 40845872 40847459 Ssu7g1667 7 34644676 34647393 ECH
Ssu1g0785 1 17232848 17234285 Ssu7g1667 7 34644676 34647393 ECH
Ssu7g1667 7 34644676 34647393 Ssu7g1667 7 34644676 34647393 ECH
Ssu4g0321 4 5334158 5337612 Ssu7g1667 7 34644676 34647393 PCT