Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1628 ATGAATGGGGTCACACACCTTGAACCAGATGACTCTGAGTTTGTTGAAGTTGATCCAACTGGCAGATACGGCAGATACAATGAAATCCTTGGTAAAGGGGCTTCAAAGACAGTATATAGAGCATTCGATGAGTATCAAGGGATTGAAGTTGCTTGGAACCAGGTCAAGTTGTATGATTTCCTGCAGAGCCCTGAAGATCTTGAGAGGCTTTACTGTGAAATTCATCTCCTGAAAACATTGAAGCACAGAAACATTATGAAATTTTACACTTCTTGGGTCGATACTGCGAACAGGAATATCAACTTCGTGACTGAAATGTTCACCTCTGGTACACTTAGACAGTATAGGCTAAAGCACAAGAGAGTTAACATCAGAGCGGTGAAGCATTGGTGTAGACAGATCTTGAGCGGACTTCTCTATCTTCATAGTCACGACCCGCCTGTGATCCATAGAGATCTAAAATGTgataatatttttgtcaatGGAAACCAGGGGGAAGTGAAGATTGGGGATCTTGGTTTGGCAGCAATTCTCCGGAAATCCCATGCTGCTCATTGCGTAGGGACGCCTGAGTTCATGGCCCCAGAAGTATATGAAGAGGCATATAATGAGTTAGTTGACATATATTCCTTTGGGATGTGCATATTAGAGATGGTCACATTTGAATATCCTTATAGTGAATGTACTCATCCGGCTCAAATCTATAAGAAAGTTATTTCTGGGAAAAAGCCAGATGCTTTGTATAGAGTGAAGGATCCAGAAGTGCGACAATTTGTTGAGAAATGCTTGGCTACAGTGTCTCTAAGGCTTTCTGCAAGGGAGCTTCTAGATGACCCATTTCTTCGAATTGACGATTATGAATATGATTTTAGACCAGTAGACAATGGGGAATTGGATGAATTTGGTCCTCTCATCAGACAGCCATTCTTTGATCTTCATCGAAGCTATAGTAACTTCAGTAATGAATACTCGAATGGCTTTGGGTATGAAGGAGACTGGTGTCTTCATCCGGCCGAGATTGAACCTAGTGGAATTGAACTTTTTGAGTACTATGATGATGAACCCTCTGAAGATGTTGACATAAGCATCAAGGGCAAGAGGAAAGATGATGGTGGCATCTTTTTGAGACTAAGAATTGCTGATAAAGAAGGTCGCATCCGAAATATTTATTTCCCATTTGACATAGAGATGGACACAGCAATGAGTGTGGCATCTGAAATGGTTGCAGAACTTGACATTACTGATCAGGATGTTACCCGAATAGCAGATATGATAGATGGGGAAATTTCTTCCTTGGTACCTGAATGGAGACCAGGACCAGGAATTGATGCAACACCCCGTTTTGCTACTCAAGGTTTCTGTCACAATTGTGTGTCTAACCATACTTCTAGTGGCTCTTTTCTGGATTTTCTTTCACATAATCCAGGTAACAAGAACTTGCAACTTCTTGAGTGTTGTAGGCATGGATGTGCTTCAATGCATGGGCGGTTTGAGGAGATTACCTTCCAATCAGAAGAGTATGACAATCATGTTAGAGGGGATCTGAACATATCAAGCCAATTAGACAGCTTGCAATGGAATCAGCATGAAAGTCGTGAACTGAGTCCAGTAGAGTCTGACCAAAGCCATTCTGATGAACAATATGAACAATTAGATAAATCAATATCAGCTAAGGATAAAGGACAGGATGTTTGGGAAAACAAGTTTTCCCCCAGTGCAGCAAATTCTCTAAGAAATTTATCAGGAAGTCATGATTTCTCTACTATCCAATCTACCTATTGTGACCTTGAAGATGACTATGAGAAAGAGATCCAAAAGGAACTTCGATGGCTCAGAGCCAAATACCAAATGGAGTTACGGGAACATAAGGATCGACAGTTTGGGCAATCTTCACATAGTAGTAACAGTGAGCACAAAACAGAAAATGGCTTTTTGTCACCTTCACTGGCAGAAACATTAAAAGGAGGCAACAATGTCCATAAAAGCAGCCCCAATTCGGACACCCAAAGGGCCCAAATTGTGAGGCGATGGAATCCCCTGGAGAAGATGTGCAATAATTGA 2061 0.4119 MNGVTHLEPDDSEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYQGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHRNIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILSGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEEAYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVISGKKPDALYRVKDPEVRQFVEKCLATVSLRLSARELLDDPFLRIDDYEYDFRPVDNGELDEFGPLIRQPFFDLHRSYSNFSNEYSNGFGYEGDWCLHPAEIEPSGIELFEYYDDEPSEDVDISIKGKRKDDGGIFLRLRIADKEGRIRNIYFPFDIEMDTAMSVASEMVAELDITDQDVTRIADMIDGEISSLVPEWRPGPGIDATPRFATQGFCHNCVSNHTSSGSFLDFLSHNPGNKNLQLLECCRHGCASMHGRFEEITFQSEEYDNHVRGDLNISSQLDSLQWNQHESRELSPVESDQSHSDEQYEQLDKSISAKDKGQDVWENKFSPSAANSLRNLSGSHDFSTIQSTYCDLEDDYEKEIQKELRWLRAKYQMELREHKDRQFGQSSHSSNSEHKTENGFLSPSLAETLKGGNNVHKSSPNSDTQRAQIVRRWNPLEKMCNN 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1628 686 MobiDBLite consensus disorder prediction 623 671 - -
Ssu7g1628 686 SMART serkin_6 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g1628 686 SUPERFAMILY Protein kinase-like (PK-like) 27 282 IPR011009 -
Ssu7g1628 686 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1 1 668 - -
Ssu7g1628 686 CDD STKc_WNK 22 281 - -
Ssu7g1628 686 Gene3D Phosphorylase Kinase; domain 1 8 105 - -
Ssu7g1628 686 MobiDBLite consensus disorder prediction 528 563 - -
Ssu7g1628 686 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g1628 686 MobiDBLite consensus disorder prediction 629 671 - -
Ssu7g1628 686 Gene3D Transferase(Phosphotransferase) domain 1 107 286 - -
Ssu7g1628 686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Ssu7g1628 686 Gene3D - 371 435 - -
Ssu7g1628 686 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 668 - -
Ssu7g1628 686 MobiDBLite consensus disorder prediction 533 563 - -
Ssu7g1628 686 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 374 427 IPR024678 GO:0004674|GO:0005524
Ssu7g1628 686 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1628 Ssu-Chr7 33963658 33967001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1628 127 645 MAP Kinase Kinase Kinase AT3G04910 60.036 0.0 607
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Ssu7g1628 Pkinase 2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1628 K08867 - gmx:100775959 1305.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1628 7 33963658 33967001 Ssu7g1628 7 33963658 33967001 ECH
Ssu4g0278 4 4545005 4548069 Ssu7g1628 7 33963658 33967001 PCT