Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1620 atgTTCGATGGAGTACCAGACCAGTTCCACCAATTCATAACTCCAAGGAGCTCACTACCTCTTCACCTACCTTTCCCTCTCCATGCTTCAGGCACCCCCAATACCACCTTCCCTACcaattttgatccttataacCCTTCCCATCAATTGCCACTCCAACCCAATCTCTTGCACCCATTACACCACCACCCCTCTACCCACAAACATgaagagaaggaagaaaataGCACCGTCCCAATGAACTTCGAAATCCAAAGAGATCAAAGGCAACAGTTACCCGAGCTGATTGATCCCTGGACTAACGACGAAGTGCTCGCGCTCCTGAAGATCAGATCTAGCATGGAGAGTTGGATCCCAGACCTCCCCTGGGAACATGTCTcaagGAAGCTAGCAGAGCTTGGATACAAGAGGTGTGCAGAGAAGTGCAAGGAGAAGTTTGAAGAAGAGAGCAGATAtttcaacaacaacattaaTTACGGcaagaataataacaacaataataataattatcggTTTCTTAGCGAGCTTGATCAGCTTTATCAAGGGGGTGGTGATCATCACCAGGTTGGGACCGAAATACAGAAACAAGACAAGACGGGCCACCATGATTCGAGAAAAATTCACGCATCGGCGACAAAACAAAACGAGCAAAGCGACGAAGCAGTGGAAAAGACAAAGGAGCGCAAGAGGAAGAGGCCCGACAATAGGTTTGAGACGTTCAAGGGTTTTTGCGAGGGCATCGTGCACAAGATGATGGCGCAGCAAGAGGAGATGCACAACAAGCTCCTCGAGGACATGATGAAACGAGACGAAGAGAAGTTCACGAGAGAGGAAGCTTGGAAGAAGCGAGAGACGGAGAAAATGAACAAGGAGCTTGAGATGATGGCACGTGAGCAAGCTATTGCCGGTGATAGACAAGCCAACATTATTCAAATCTTGAACGAATTCTCGGCCACTTCCCCTGCAAGCCACACCCTCAAGGTAACCAATGGTTCAAACCCAAACACCCGCATTGCACAAAACCCTAATCCAAACACTCCAGCTTTACCCACAACAGAAAACCCTACCTTAAGTCTTGCACAAGACACATTACAAGTGattccttcttcctcttctacTTCAGCTCCAGTACCCCAGAACCCTAGTTCATCTTCTCTACATAGCcagaataataacaataataataataataataataataataataatccagTAGAGACAAATTCGGTTTTGAATAAAGGCTCCTCAAGCGTTAATGTCTCGACGAGTGAGAAAGACGATGTTGGGAGAAGGTGGCCAAAGGACGAAGTGTTGGCACTGATAAACCTGAGGTGCAATAGTGTAAACAACAACGGTGATGAGAAGGAAGGGAACAAGGTCCCTCTGTGGGAGAGAATCTCACAAGGGATGTCGGAGTTGGGATACAAGAGAAGTGCAAAGAGGTGCAAAGAGAAGTGGGAGAACATAAACAAGTACTTCAGGAAAACTAAGGATGTTAATAAGAAGAGGTCCCTTGACTCAAGGACTTGTCCCTACTTTCATCAATTGAGCAGTCTGTATGACCAAGGAAAACTTGTTCTACAATCTGAAAGGTCCGAAAGCCACTTGAATAGTAATCCACCTGAGAATCCCGAGCTAGTGCCACCAAATCATCAAACAGAAGCCGATCAGTCTTCTTCTCAAGTGGGGTCTGCTGGTTTCAGTGTGCAGCAGGTTGATCATGGAGGTGAGAAACCCTTGATGCAAGTACCTTCTTTGGAATTTGATCAGTTTTAA 1776 0.4296 MFDGVPDQFHQFITPRSSLPLHLPFPLHASGTPNTTFPTNFDPYNPSHQLPLQPNLLHPLHHHPSTHKHEEKEENSTVPMNFEIQRDQRQQLPELIDPWTNDEVLALLKIRSSMESWIPDLPWEHVSRKLAELGYKRCAEKCKEKFEEESRYFNNNINYGKNNNNNNNNYRFLSELDQLYQGGGDHHQVGTEIQKQDKTGHHDSRKIHASATKQNEQSDEAVEKTKERKRKRPDNRFETFKGFCEGIVHKMMAQQEEMHNKLLEDMMKRDEEKFTREEAWKKRETEKMNKELEMMAREQAIAGDRQANIIQILNEFSATSPASHTLKVTNGSNPNTRIAQNPNPNTPALPTTENPTLSLAQDTLQVIPSSSSTSAPVPQNPSSSSLHSQNNNNNNNNNNNNNNPVETNSVLNKGSSSVNVSTSEKDDVGRRWPKDEVLALINLRCNSVNNNGDEKEGNKVPLWERISQGMSELGYKRSAKRCKEKWENINKYFRKTKDVNKKRSLDSRTCPYFHQLSSLYDQGKLVLQSERSESHLNSNPPENPELVPPNHQTEADQSSSQVGSAGFSVQQVDHGGEKPLMQVPSLEFDQF 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1620 591 MobiDBLite consensus disorder prediction 550 568 - -
Ssu7g1620 591 MobiDBLite consensus disorder prediction 55 75 - -
Ssu7g1620 591 MobiDBLite consensus disorder prediction 323 355 - -
Ssu7g1620 591 ProSiteProfiles Myb-like domain profile. 98 150 IPR001005 -
Ssu7g1620 591 MobiDBLite consensus disorder prediction 368 423 - -
Ssu7g1620 591 CDD GT1 430 497 - -
Ssu7g1620 591 MobiDBLite consensus disorder prediction 530 591 - -
Ssu7g1620 591 Pfam Myb/SANT-like DNA-binding domain 97 179 IPR044822 -
Ssu7g1620 591 Pfam Myb/SANT-like DNA-binding domain 430 518 IPR044822 -
Ssu7g1620 591 Gene3D - 432 495 - -
Ssu7g1620 591 Gene3D - 99 155 - -
Ssu7g1620 591 Coils Coil 208 228 - -
Ssu7g1620 591 PANTHER TRIHELIX TRANSCRIPTION FACTOR GTL2 13 580 - -
Ssu7g1620 591 Coils Coil 253 273 - -
Ssu7g1620 591 MobiDBLite consensus disorder prediction 368 429 - -
Ssu7g1620 591 MobiDBLite consensus disorder prediction 193 234 - -
Ssu7g1620 591 ProSiteProfiles Myb-like domain profile. 431 490 IPR001005 -
Ssu7g1620 591 PANTHER - 13 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1620 Ssu-Chr7 33860375 33862546 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1620 1 522 Trihelix Transcription Factor Family AT5G28300 39.065 7.56e-96 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Ssu7g1620 Myb_DNA-bind_4 3.4e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1620 - - ccaj:109795059 802.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1620 7 33860375 33862546 Ssu7g1620 7 33860375 33862546 ECH
Ssu4g0269 4 4388587 4390845 Ssu7g1620 7 33860375 33862546 PCT