Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1611 ATGGCGGGTAATAGCTCGGAGGGGTTGGGCGACGATTTCTTCGAACAGATCTTATCAGTGCCTGAAGCCCCAGTGGGATACGGCAGAACGGTAGTGAATGACGTGGGAGTGTTGCAATTGGGGTCCACAAGTGGTGCTGCTGCTGGTTTGCGAGCAGGGATAATGCCTCTCGGCTTGAATTTGGAACAAGCTGGCTTCCTAAGACACCAAGATTCCCGAAACCTAGTTGACGACGTCGTTAATGTTGAGAGCAGCATTCACAataaccaccaccaccacctcacTCTCCATAATAACCATACCAACTCCTCATCACCCTCTTCTACTGCAGCAATCACCGATAGGGATTCGATGCATATGAGGGGTTTGTTTTCAGCGTTTGGACAATTGCATACTCCTACTCTTGCTCACTCTGTCCGCCCCACGCTGCCATCGCATCCACCACGTCCTCGGCCCCAACTCCACCTCCACCATCAAAACCAAcagGCGTTTCAGGGCCAGCCAGCTGCAGCTCCACCGTCAATGACTGCTGTGCCACAACCACCTGGCATCCGCCCTCGTGTGAGAGCAAGAAGAGGCCAAGCCACAGATCCCCACAGTATTGCTGAGCGGTTGCGTCGTGAAAGAATCGCTGAAAGAATGAAGGCATTGCAGGAATTAGTTCCCAGCATCAATAAGACGGACAGAGCAGCCATGCTTGATGAAATTGTGGATTATGTGAAGTTCCTAAGGCTCCAGGTTAAGGTCCTGAGTATGAGTAGACTAGGGGGAGCTGGTGCAGTTGCTCAGCTTGTGGCTGATGTTCCCCTTTCAGCAGTGGAGGGGGAGGACATAGAAGGTGGAGCCAATGAGCAAGCCTGGGACAAGTGGTCCAATGATGGCACAGAACAACAAGTGGCTAAACTTATGGAAGAAGATGTGGGAGCTGCTATGCAATTTCTTCAGTCCAAGGCACTTTGTATCATGCCCATATCTCTAGCCTCAGCCATTTTTCGTATGCCTCAATCAGAAGCATCGACAGTCATCAAGCCTGAATCAAACAATCACTAA 1050 0.4962 MAGNSSEGLGDDFFEQILSVPEAPVGYGRTVVNDVGVLQLGSTSGAAAGLRAGIMPLGLNLEQAGFLRHQDSRNLVDDVVNVESSIHNNHHHHLTLHNNHTNSSSPSSTAAITDRDSMHMRGLFSAFGQLHTPTLAHSVRPTLPSHPPRPRPQLHLHHQNQQAFQGQPAAAPPSMTAVPQPPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSAVEGEDIEGGANEQAWDKWSNDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRMPQSEASTVIKPESNNH 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1611 349 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 336 - -
Ssu7g1611 349 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 192 253 IPR036638 GO:0046983
Ssu7g1611 349 MobiDBLite consensus disorder prediction 155 169 - -
Ssu7g1611 349 MobiDBLite consensus disorder prediction 137 198 - -
Ssu7g1611 349 Gene3D - 189 251 IPR036638 GO:0046983
Ssu7g1611 349 SMART finulus 200 249 IPR011598 GO:0046983
Ssu7g1611 349 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 194 243 IPR011598 GO:0046983
Ssu7g1611 349 Pfam Helix-loop-helix DNA-binding domain 199 243 IPR011598 GO:0046983
Ssu7g1611 349 PANTHER DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED 7 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1611 Ssu-Chr7 33673063 33678282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1611 164 347 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 75.806 1.72e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu7g1611 HLH 3.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1611 - - vun:114189791 483.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2170 7 42644215 42648189 Ssu7g1611 7 33673063 33678282 ECH
Ssu7g1611 7 33673063 33678282 Ssu7g1611 7 33673063 33678282 ECH