Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1610 ATGATCCAACAACGCCAAACCCCTACACGTGGCAGCATCTGGGCCGTGCGGTTCCCTCGCCCCACTGCACCCATAGATCACCAAAACCATCGACCGAGCCAAGACTTCTTTCCACTTCCCAAccaaattctctctctctctctctcagttTCGCTTTCACCGAAAACTTCCATTTCCCGAACTCCACCTGAGAAAAAGATCCCCGCGCACGCACGGACGCGCCCTGTTTGTTTCTGTTCTGGCCTGGTGGTTGTTGATGCGTACAGGATGACGAGCGTGTTGGACGCAGAACGAGACAAGTACAACATGATAAACTTCGAAGAAACCGAGTTGCGACTCGGCCTCCCTGGCGGGTCTGCGAATGATCACGGCGAGTTAACACTCAAGGGCAGTGGCGGCAAGAGAGGCTTCTCTGAAACTGCTTCTGTTGATTTGAAGCTTAATCTTTCTTCCAATAATGACTTGGGCACTGCCTCGGTTTCAACCTCGTCTGTGGCTACAGAGAAGGCCAAGGAGAAGACTACTACTGCTGCTGCACCTCCTCCTCGGGCTAATGACCCAACTAGACCACCTGCCAAGGCACAAGTGGTGGGTTGGCCACCAGTTCGATCATTCAGAAAGAACATCGTGAATGTTCAAAGGAACAACAATGAGGAAGCGGAGAAGAGTTgcgtcaccaccaccacgaaCAACGGCGGCAATAGTGGAGCAGCTTTCGTGAAGGTGAGCATGGATGGTGCACCATATCTACGCAAAGTGGACCTCAAATTGTACAAGAGCTACCAAGAGCTGTCAGATGCGCTGGCTAAAATGTTCAGTTCCTTCACAATTGACAAGTGTGGGTCCCAAGGCATGAAGGACTTTATGAATGAGACCAAATTGATAGACCTTTTGAACGGCTCTGATTATGTACCCACATATGAAGACAAGGACGGTGACTGGATGCTCGTGGGCGATGTGCCCTGGGAGATGTTCGTCGAATCATGCAAGCGCCTGCGCATAATGAAAGGTTCTGAGGCAATCGGGCTTGCGCCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGA 1068 0.4906 MIQQRQTPTRGSIWAVRFPRPTAPIDHQNHRPSQDFFPLPNQILSLSLSVSLSPKTSISRTPPEKKIPAHARTRPVCFCSGLVVVDAYRMTSVLDAERDKYNMINFEETELRLGLPGGSANDHGELTLKGSGGKRGFSETASVDLKLNLSSNNDLGTASVSTSSVATEKAKEKTTTAAAPPPRANDPTRPPAKAQVVGWPPVRSFRKNIVNVQRNNNEEAEKSCVTTTTNNGGNSGAAFVKVSMDGAPYLRKVDLKLYKSYQELSDALAKMFSSFTIDKCGSQGMKDFMNETKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVEKCKNRS 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1610 355 MobiDBLite consensus disorder prediction 152 195 - -
Ssu7g1610 355 ProSiteProfiles PB1 domain profile. 237 337 IPR000270 GO:0005515
Ssu7g1610 355 PANTHER AUXIN-INDUCED PROTEIN AUX28 101 348 - -
Ssu7g1610 355 MobiDBLite consensus disorder prediction 152 171 - -
Ssu7g1610 355 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 101 348 IPR003311 GO:0005634|GO:0006355
Ssu7g1610 355 SUPERFAMILY CAD & PB1 domains 234 336 - -
Ssu7g1610 355 Pfam AUX/IAA family 108 346 IPR033389 -
Ssu7g1610 355 Gene3D - 232 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1610 Ssu-Chr7 33660836 33663816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1610 241 340 B3 DNA Binding Superfamily AT3G61830 35.000 7.87e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Ssu7g1610 AUX_IAA 2.3e-87 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1610 K14484 - gmx:100781847 362.459