Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1604 ATGGTGTCGAGCCAGGTGGTGAAAGTGAGGAGAGAAACGCTACGAGCATGCATGACATGCCCTCTCTGCCATAACCTCGTCAAAGATGCCACCACCATCTCTCTCTGCCTTCACACCTTTTGCAGGAAGTGCATATTTGAGAAATTCTCGGATGAGGAGATGGATTACTGTCCTGTGTGCAATATTGATCTAGGCTGCCTTCCGGTCGACAAACTCAGGCCAGACCATAATTTGCAAGATATAAGGGCAAAAATATTcccttttaaaagaaaaaagatcaaGGCCCAAGAAGTTTTGTCTTCAATATCATTGCCTgcaaaaaggaaggaaagatcACTTTCATCATTGGTAGTCAGTGCTCCCAAAGTTTCAATGCAACCCGGCTTTACAGGAAAGAGAACAAAAACCAGTACAAGAAAGGCTGCTGCTTTACGTGGATGCAGTTTTCTTCTTGAAGAATCCATaaagaaggaagaaacaaaTGGTGAAGATAATATGGATTCTTCCATGGCTGAGCCTTCTAAGAAGCACAAACCCAATGAAGATACAGAGAACAGTGTGGAACATACAGAAGGGAAGGTTGATCTCTGGACACCACTGAACTGTCTTGTTGAAGCTGCCAACAGAACAAAGTCCTCCAGGTCAAATTCACAAGCAACTCCTCTTGCCAAATTAGAGTCCCCAACAACTACTCATGGTGGACAAGATACACCTGAAATTACAACCAAAACAGACCTACCTGCTTCTGTCCAGAGTGAATTTAACAttccaaaatccaaaaataaggATACTGGACATAAAACAATATTTGGAGATGACAAGGATGCAAACAGCTTGCCTTCTGGACCAGTTAAGCGAAGAAGGTTGCGTCCTGCTGGTCAGAAAAGAATTGCAGCATCTGAGATGTCTGCCTCATCCCCAGCCCCACTAGATGCAACAGGCGGCAAGTGCAACAGAAAAAACAGTCCTATTTGGTTTTCATTAGTTGCTTCAGAGGACcaGAAAGGACATGTTCCCTTGCCACAGATCTCAGCATGTTACTTAAGAATAAAGGATGGTAGTGTGCCCGTCTCATTTATTCAAAAGTACCTTGTGAAGAAACTTAATCTTGCCAGTGAAGCAGAGGTGGAAATAATGTGCCGGGGTCAGCCGGTGCTCCCATCTCTGCAACTACATAATTTAGTAGATCTATGGTTCCGGACAGCGTCAACCTCGAAAAAGATACCAGCATCTGTGGGGTCCTCAGCCAAagattttgtgatggttttatcATATTGTCGAAAGGCCTTGCCTCCTTGA 1299 0.4126 MVSSQVVKVRRETLRACMTCPLCHNLVKDATTISLCLHTFCRKCIFEKFSDEEMDYCPVCNIDLGCLPVDKLRPDHNLQDIRAKIFPFKRKKIKAQEVLSSISLPAKRKERSLSSLVVSAPKVSMQPGFTGKRTKTSTRKAAALRGCSFLLEESIKKEETNGEDNMDSSMAEPSKKHKPNEDTENSVEHTEGKVDLWTPLNCLVEAANRTKSSRSNSQATPLAKLESPTTTHGGQDTPEITTKTDLPASVQSEFNIPKSKNKDTGHKTIFGDDKDANSLPSGPVKRRRLRPAGQKRIAASEMSASSPAPLDATGGKCNRKNSPIWFSLVASEDQKGHVPLPQISACYLRIKDGSVPVSFIQKYLVKKLNLASEAEVEIMCRGQPVLPSLQLHNLVDLWFRTASTSKKIPASVGSSAKDFVMVLSYCRKALPP 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1604 432 MobiDBLite consensus disorder prediction 208 258 - -
Ssu7g1604 432 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 4 430 IPR044807 GO:0004842
Ssu7g1604 432 PANTHER UBIQUITIN PROTEIN LIGASE DRIP2, PUTATIVE-RELATED 4 430 - -
Ssu7g1604 432 SMART ring_2 20 60 IPR001841 -
Ssu7g1604 432 MobiDBLite consensus disorder prediction 208 314 - -
Ssu7g1604 432 MobiDBLite consensus disorder prediction 259 273 - -
Ssu7g1604 432 MobiDBLite consensus disorder prediction 155 191 - -
Ssu7g1604 432 Pfam Zinc finger, C3HC4 type (RING finger) 20 60 - -
Ssu7g1604 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 110 IPR013083 -
Ssu7g1604 432 Gene3D - 309 408 - -
Ssu7g1604 432 MobiDBLite consensus disorder prediction 155 192 - -
Ssu7g1604 432 ProSiteProfiles Zinc finger RING-type profile. 20 61 IPR001841 -
Ssu7g1604 432 ProSitePatterns Zinc finger RING-type signature. 36 45 IPR017907 -
Ssu7g1604 432 SUPERFAMILY RING/U-box 14 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1604 Ssu-Chr7 33566905 33572275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1604 1 351 C3H Transcription Factor Family AT2G30580 43.548 5.20e-85 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1604 K16277 - gmx:100783999 805.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2181 7 42799727 42804613 Ssu7g1604 7 33566905 33572275 ECH
Ssu7g1604 7 33566905 33572275 Ssu7g1604 7 33566905 33572275 ECH