Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1600 ATGTCTACCGCAGCGCAATCCAAGGCCAAGAAAACGGCGTCGTCCAAGAAGCCCCTCTCCCACCCCCCCTTCGCCGTGATGATAACCGAGGCGATAGCAAGTCTGAAGGAGAGAACCGGTTCGAGCCAATACGCGATTACGAAGTTCATCGAAGGGAAGCACAAGGAGTTGCCTCCAACCTTTAAGAAGCTTGTCCTCGTTCATTTGAAGAAGTCGGTTGCTGCTGGCAAGCTCGTTAAGGTGAAAAACTCCTTCAAGCTTGCGCCTACTAAACCTGCTCCGGTTAaagctgctgctgctgctgctccTAGGAAGCCCAGGGCCGTGTCTAAGCCCACTGCCAAGGCCGCTTCCAAGCCCAAACCTGCACCTAAAAAGAAGGCTGTCGCGAAGCCCAAGCCCAAGGCCAAAGCTGCGGCGGGAACTGCTAAGCCCAAGGCCAAGCCTGCAAAGGTGACGGCGGCGAAGAAGGTTCCTGCTAAGCCCGCTAAGAAGACTCCCGTAAAGGCTGTGAAGAAGCCCAAGAGCGTTGTGAAGAAGCCAAAGAGCGTGAAATCGCCGGCCAAGAAGGCTAAGAAGTGA 582 0.5292 MSTAAQSKAKKTASSKKPLSHPPFAVMITEAIASLKERTGSSQYAITKFIEGKHKELPPTFKKLVLVHLKKSVAAGKLVKVKNSFKLAPTKPAPVKAAAAAAPRKPRAVSKPTAKAASKPKPAPKKKAVAKPKPKAKAAAGTAKPKAKPAKVTAAKKVPAKPAKKTPVKAVKKPKSVVKKPKSVKSPAKKAKK 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1600 193 PRINTS Histone H5 signature 34 51 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Ssu7g1600 193 PRINTS Histone H5 signature 115 129 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Ssu7g1600 193 PRINTS Histone H5 signature 7 28 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Ssu7g1600 193 PRINTS Histone H5 signature 154 171 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Ssu7g1600 193 PRINTS Histone H5 signature 176 193 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Ssu7g1600 193 Gene3D - 15 106 IPR036388 -
Ssu7g1600 193 CDD H15 20 90 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ssu7g1600 193 MobiDBLite consensus disorder prediction 162 193 - -
Ssu7g1600 193 MobiDBLite consensus disorder prediction 1 21 - -
Ssu7g1600 193 SUPERFAMILY "Winged helix" DNA-binding domain 17 98 IPR036390 -
Ssu7g1600 193 MobiDBLite consensus disorder prediction 90 193 - -
Ssu7g1600 193 PANTHER HISTONE H1 2 192 - -
Ssu7g1600 193 Pfam linker histone H1 and H5 family 21 88 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ssu7g1600 193 PANTHER LINKER HISTONE H1 AND H5 FAMILY PROTEIN 2 192 - -
Ssu7g1600 193 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 20 89 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ssu7g1600 193 SMART h15plus2 18 84 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1600 Ssu-Chr7 33530746 33531423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1600 22 87 Single Myb Histone (SMH) Gene Family AT1G72740 34.848 3.47e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1600 K11275 - gmx:100810590 144.05