Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1584 ATGGAGGGAAAAACTGAGGATGAAGTGGTGGATATTGAGAGTGCTTCTAGTGGTTCTTTCAATGATGATTCAGATGATGAGGAATCTTTAGTGCCTGAAATAGATGATGAAGTGCATCTTGAGGAGCCATTAACAGAAGAGGAAATACAAGATCTTATTTCTGAGTTGTTAGAAGTGGAGAGTAAGgcTGCAGAGGCTCAAGAAGCTCTTGAAGTGGAGTCTCTTTCTAAAGTGGAGAGTGAAGTTAGACAAGAATTGAAGCAAACTCTTCAGGAGGATGATTTGGAAATTGCTGTTGCTGATGAGATGACTACTCTTAAAGAAGAGTGGGAAGCCGTTCTGGATGACCTTGAAACTGAAAGTGCCCACTTACTGGAACAACTTGATGGGGCTGGCATTGAGCTTCCTAGCCTTTATAAGTGGATTGAAAGAGAAGCTCCTAATGTTTGCTCCACTGAAGCATGGAAAAAGAGGAATCATTGGGTTGGGTCTCTAGCAACTGCTGAAATTGCTGAGTCAATTGCTGATGCTGAGAAACATCTACAAGTAAACAGACCTGTTAGAAGGCGACATGGTAAACTACTGGAAGAGGGTGCTAGTGGCTTTCTCCAAAAAAAACTTTGTGATGAAACCCAGGAGCCAGTAAAGAAAGAAACTGAGGGGGATTGGGATCTGTTCAATAAAATAGTTTCTGATGGGAGTGGCATTGATGCTTCATTTGGCAGTAAGCATTGGGGTTCTGTTTATTTGGCCAGCACTCCACAGCAAGCTGCCTTGATGGGACTCAAATTTCCTGGAGTTGATGAGgtGGAGGagattgatgatgttgatggTAATTCTATGGATCCATTTATTGCAGCTGCCATTGCAAACGAAAGGGAATTAGATCTTTCTGATGAGCAAAGGAGACAATTTACAAAGGTCAAAGAAGAGGATGATGCAGTTGTTGATAGGAAACTTCAAATCCGTTTGAAACATAGGAGGCAtcaaaagaaaagcaaagagCGAGAAATGAGCACATCTATCCTGTTGACGGAGAGCCACACTGACAATGGGAAGGATACATGTGTTCTTATGGAGACCGATAAAATTGAAGGTTTTGATGCCAGTCATCATCTTGACAAAGAAAAGCCTATGAGTACTGGTGATTTGTCAGATCCACCCAAATCTTCATCGCATGATGTTATTGAACAGAGAGGAATCAAACGTGTAAACAGTGGTGAgcttgatgatgataataaaaagTGTCGGATTGTTATTGTTGACAGTGATAATGAAGCTGATGTCACTGGAGAGAAATTGGATTGCAATACTCAAGAGGTAAAAGAAGATATATGTAACAATGGTGCTGATTCTCTTCCTTCAGAGCAACTGGATGAAAAATTTTGGTGCACAGTTTGTGATAAAGTGGCTCTTGAGGTGCATCCACATCCTTTCTTGAAAGTGATTATTTGTGGAGATTGCAATTgcttattaaaagaaaagacaCATAAAAAGGATATAGGACAAGATTGTTCAGAGGGTTACTGTACATGGTGTGGCGGAAGCGGTGAATTAGTTAGTTGTAAATTATGCAAGATTTTATTCTGCACCAAATGTTTAAAGAAGAATCTTGGTGTAGAATTGGTTCCTGATGCTCAGGCCACTAGCTggcattgttgttgttgccatcCAAATCTTTTGCAAAGACTGTCCTTGCAACTAGAGAAAGCTATGGGGTCTGCTGATATAATAGTTTCCAGTTCTAGTAGTGATTCAGATAATTCAGATGATTCAGATGCAGAGATTAATGTTACAATCAGcTCCAAGCGAAGACACAAAAAGAAGATTCGGAGGATACTTGATGATGCTGAATTAGGAGAagagacaaaaaggaaaatagcaATTGAAAAGGAACGTCAGGAACGCCTGAAGTCTTTGCGAGGGCAGTTTTCTGCCTCATCAATTGAGATGAGCTCTGACGGCTGTAACGGGAATTTATCAGAAGGTGCAAGTGTTGAAGTTCTTGGTGATGCACTAGCAGGTTACATAGTGAATGTTGTAAGGGAGAAAGGTGAAGAAGCTGTCAGAATTCCTCCTAGCATCTCAGCTAAACTGAAGGCCCATcagATTACTGGAATAAGATTCATGTGGGAAAATATAATACAGTCAATCAGAAAAGTGAAGTCTGGGGATAAAGGTCTTGGATGTATTCTAGCTCATATGATGGGCCTTGGTAAAACTTTTCAGGTGATAGCTTTTTTGTACACTGCAATGAGATGCGTTGATTTGGGGTTAAGAACTGCGCTTATAGTCACACCTGTCAATGTGTTACATAATTGGCGGCAGGAGTTCATCAAGTGGAGACCTTCTGAGTTAAAGCCACTCAAGGTCTTCATGCTGGAAGACGTATCAAGAGATAGAAGGGCAGAATTGCTTGCAAAGTGGAGAGCTAAAGGTGGTGTCTTTTTGATTGGTTATACTGCTTTCCGAAATTTGTCTTTTGGGAAGCATGTGAAAGATCGGCACATGGCCAGAGAAATTTGCCTTGCTTTGCAGGATGGACCTGACATTCTTGTTTGTGATGAAGcccatatgataaaaaatactaaGGCTGATGTAACTCAAGCCTTGAAACAAGTAAAATGCCAGAGAAGAATTGCGCTCACTGGATCTCCTCTTCAAAACAATCTCATGGAATATTATTGTATGGTTGATTTTGTAAGAGAAGGTTTTCTTGGAAGCAGCCATGAATTTCGGAACCGTTTCCAAAATCCTATAGAGAATGGACAACACACCAATTCAACTCTGACTGATGTGAAAATTATGAACCAAAGGTCTCATATCCTCTATGAACAATTAAAAGGCTTTGTTCAAAGAATGGATATGAATGTAGTGAAGAAGGATCTACCACCCAAAACTGTCTTCGTGATAACTGTCAAGCTTTCTCCCTTGCAGAGAAAATTGTACAAGAGATTCCTTGATGTGCATGGGTTCACAACCCAGGTACATCCTGAAATGTTAAGGAAGAGATGTTTTTTTGCTGGGTACCAGGCATTAGCTCGGATATGGAACCACCCTGGGATCTTGCAGTTGACAAAAGAAGTCAAGGACTATGTTAAACACGAAGATGCTGTTGAGAATTTTCTTGTGGATGATAGTTCCAGTGATGAAAATTCTGATTACAATGTGCTTGCCGGAGAGAAGATGAGGTATGCAAATGACTTGTTGCAAAGGAAAGATGATAATGGCTTTTTTTTGAAgGGTTGGTGGAATGATCTTCTTCatggaaaaatttataaagagcTCGATCACAGTGGCAAAATGGTTTTACTGATGGAGATACTAACCATGAGTTCTGATGTGGGCGATAAGGTATTAGTTTTTAGTCAGAGCATACCAACCCTTGACCTCATTGAACTTTATCTCTCAAGGATACCTCGACGTGGCAAGCAAGGGAAGTTTTGGAAAAAGGGAAAAGATTGGTATAGGTTGGATGGAAGGACAGTGAGTTCTGAGAGGCAGAAGCTTGTAGAGAGTTTTAATGAGCCTTTGAATAAGAGGGTAAAGTGCACTCTGATTTCAACCAGAGCAGGCTCTTTGGGTATTAATCTTCATGCAGCTAATCGTGTTGTTATAGTTGATGGTTCTTGGAATCCAACATATGATCTCCAGGCTATCTATCGATCATGGAGGTATGGGCAGACAAAGCCTGTGTTTGCTTATCGATTGCTGGCTCATGGAACTATGGAAGAGAAGATATATAAGCGCCAGGTAACAAAGGAGGGGCTTGCTGCTAGGGTGGTTGATAGACAACAGGTGCATAGGACCATTTCCAAAGAAGAAATGCTGCATCTCTTTGAGTTTGGTGACGATGACAACCCTGAGACGTTGGCTGATCTAAGTCAAGAAAATGAGCATCCAGACAACCCAATTTTGGTTGGGCATTCACTGAAACACACAGCACCACATTCAAATGGAAGTAGTTCTTCTGATAAGTTAATGGAAAGCTTACTTAGCAAGCATCATCCACGGTGGATTGCCAATTATCATGAACATGAATCCCTGTTACAAGAAAATGAAGAGGAAAAGCTATCAAAAGAGGAGCAAGATATGGCTTGGGAGGTTTATCGGAAATCGCTGGAATGGGAAGAAGTGCAGAGAGTACCACTTGGTGAGTCTATTATGCCTGATCAAAAGCCAGCAATACCAAATGCAGTGCCCCACGTATCAGAAACCTGCAGCACCTTGCCAGGTAAACTAAGCAGACGTTTCATGACACGGAAATGCACCAACCTTGCGCACTTGTTGACACTGAGAAGCCAGGGAACAAAATATGGCTGCAGTACTGTCTGTGGGGAATGCGCCCAGGAGATAAGGTGGGAAGACTTGAAGAAGAGATAG 4383 0.3997 MEGKTEDEVVDIESASSGSFNDDSDDEESLVPEIDDEVHLEEPLTEEEIQDLISELLEVESKAAEAQEALEVESLSKVESEVRQELKQTLQEDDLEIAVADEMTTLKEEWEAVLDDLETESAHLLEQLDGAGIELPSLYKWIEREAPNVCSTEAWKKRNHWVGSLATAEIAESIADAEKHLQVNRPVRRRHGKLLEEGASGFLQKKLCDETQEPVKKETEGDWDLFNKIVSDGSGIDASFGSKHWGSVYLASTPQQAALMGLKFPGVDEVEEIDDVDGNSMDPFIAAAIANERELDLSDEQRRQFTKVKEEDDAVVDRKLQIRLKHRRHQKKSKEREMSTSILLTESHTDNGKDTCVLMETDKIEGFDASHHLDKEKPMSTGDLSDPPKSSSHDVIEQRGIKRVNSGELDDDNKKCRIVIVDSDNEADVTGEKLDCNTQEVKEDICNNGADSLPSEQLDEKFWCTVCDKVALEVHPHPFLKVIICGDCNCLLKEKTHKKDIGQDCSEGYCTWCGGSGELVSCKLCKILFCTKCLKKNLGVELVPDAQATSWHCCCCHPNLLQRLSLQLEKAMGSADIIVSSSSSDSDNSDDSDAEINVTISSKRRHKKKIRRILDDAELGEETKRKIAIEKERQERLKSLRGQFSASSIEMSSDGCNGNLSEGASVEVLGDALAGYIVNVVREKGEEAVRIPPSISAKLKAHQITGIRFMWENIIQSIRKVKSGDKGLGCILAHMMGLGKTFQVIAFLYTAMRCVDLGLRTALIVTPVNVLHNWRQEFIKWRPSELKPLKVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRHMAREICLALQDGPDILVCDEAHMIKNTKADVTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLTDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRKLYKRFLDVHGFTTQVHPEMLRKRCFFAGYQALARIWNHPGILQLTKEVKDYVKHEDAVENFLVDDSSSDENSDYNVLAGEKMRYANDLLQRKDDNGFFLKGWWNDLLHGKIYKELDHSGKMVLLMEILTMSSDVGDKVLVFSQSIPTLDLIELYLSRIPRRGKQGKFWKKGKDWYRLDGRTVSSERQKLVESFNEPLNKRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRSWRYGQTKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDDNPETLADLSQENEHPDNPILVGHSLKHTAPHSNGSSSSDKLMESLLSKHHPRWIANYHEHESLLQENEEEKLSKEEQDMAWEVYRKSLEWEEVQRVPLGESIMPDQKPAIPNAVPHVSETCSTLPGKLSRRFMTRKCTNLAHLLTLRSQGTKYGCSTVCGECAQEIRWEDLKKR 1460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1584 1460 PANTHER RAD54-LIKE 29 1458 IPR044574 GO:0016887
Ssu7g1584 1460 CDD SF2_C_SNF 1095 1238 - -
Ssu7g1584 1460 PANTHER RAD54-LIKE 29 1458 - -
Ssu7g1584 1460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 959 1291 IPR027417 -
Ssu7g1584 1460 ProSiteProfiles ADD domain profile. 452 584 IPR025766 -
Ssu7g1584 1460 Pfam Helicase conserved C-terminal domain 1103 1227 IPR001650 -
Ssu7g1584 1460 MobiDBLite consensus disorder prediction 1288 1326 - -
Ssu7g1584 1460 CDD ADDz_ATRX 464 558 - -
Ssu7g1584 1460 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 721 904 IPR014001 -
Ssu7g1584 1460 MobiDBLite consensus disorder prediction 370 396 - -
Ssu7g1584 1460 Gene3D - 1085 1315 IPR027417 -
Ssu7g1584 1460 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1107 1275 IPR001650 -
Ssu7g1584 1460 Coils Coil 49 69 - -
Ssu7g1584 1460 Gene3D - 672 953 IPR038718 -
Ssu7g1584 1460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 685 953 IPR027417 -
Ssu7g1584 1460 SMART helicmild6 1130 1227 IPR001650 -
Ssu7g1584 1460 MobiDBLite consensus disorder prediction 20 39 - -
Ssu7g1584 1460 Pfam SNF2-related domain 721 1022 IPR000330 GO:0005524|GO:0140658
Ssu7g1584 1460 Gene3D - 976 1053 - -
Ssu7g1584 1460 SMART ultradead3 695 916 IPR014001 -
Ssu7g1584 1460 Coils Coil 1343 1363 - -
Ssu7g1584 1460 Coils Coil 100 127 - -
Ssu7g1584 1460 SUPERFAMILY FYVE/PHD zinc finger 506 562 IPR011011 -
Ssu7g1584 1460 MobiDBLite consensus disorder prediction 1 39 - -
Ssu7g1584 1460 Gene3D - 957 1072 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1584 Ssu-Chr7 33232860 33263929 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1584 624 1280 RAD5 or RAD16-like Gene Family AT5G43530 23.552 2.02e-29 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ssu7g1584 SNF2_N 1.2e-50 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1584 K10779 - gmx:100794911 2616.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1584 7 33232860 33263929 Ssu7g1584 7 33232860 33263929 ECH