Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1577 ATGGCTTCTAATCCAAGAGTCATTAAGGCTTATGATGCTATGAGGTCCTTAGGAATTTCTGATGAAGAGGTGAAACcggtgttaaaaaaattgttacaattgTATGATAGAAAGTGGGAACTTATTGAAGAAGACAATTATCGTACACTTATAGATGCATACTTTGAGTTGAAGGAAGATAAGcAAGCAGAAGGTAAGAGAAAAGCTCCAATCAGTTTTCATGATGGGGAAAGGCCGAAACAGAAACTGCATTTGGTAGATGGAGATGACCAGGTTTCATCGACTGACAACTCCAGACAAGGGTTGTCTGTAGAAGACACTGAAATACCTCCCAAGACTTTTAAACAGGAAAtcattaaaccttttaaaacCTCCATTGGAGATATGGAGCCCACAACCAGTTCACAAGCATTTCAGACAAAGTTGAGTGAGGTTGAAAGGATCTCATCTTTGCCTTGCATGGCTGCTAGAGATAGAAAATTGCATCCTGAGAAAGCATCAGCTGCAGGGCATTGTgaagattcaattgataaacCAAGCAATCCTCATATCCATAGGAAAAATATATCAAGTGATCGTCATCAGAAGGAGCTTATGACACCAAGAACTGAGAAACCTAAGTTACATCTTGGACCTGTTTCAACGAGTTACAAGGGCTCATCTGATGTTTCAAAAGGAAATCTTCGTACCAAATCTACGTCAGCTCTGTATCAGAATGTCCACAAGAAAGATGATAGCTCAGCATGCAATAATAACAACAGAATTCAGAAGGGTAATATTAACATTGCTTCTTCACCTTTGGGAGaagttaaaatttctttaaacttTGATGCTGCTTTGGGACAACCAAACTTCCATATTCCTGATTTGGATGCTGTTATGAAGTCCATGGAGGAGAAATACCTGAAGGCTTACAAGATTGTTGAGCCTCAATCATCTATGGTGAAACTATTAGATGATTTATGTGGAAGTTACTTGAAGCTGGGCTTGAATTTAAATCGAAAGGGGTCAGCTCTTAAGTATGCTAATTCTCGCAATGTGGTATGTCTGCCACAGGAAGCAGTTACTCAAGATGAAAAGAATTCCTTTCACTTTCTCGGTGACATAACAAAAGGTTCAGAGAATGTTAAAATATCATTGTTAGATGAAACTGGAAGTGAGGACTTGCCAAAGTTTAATTACATACCCtataatgtaatatatcaaGATGCTAATGTAAATATTTCACTTGCTCGTATTGCGGATGAGGGTTGCTGTGCTGATTGTGCTGGCAACTGTCTTTCCTTATCATTTCCTTGTGCATGTGCTCAAGAAACCGGTGGGGAGTTTGCTTACACTCCTGATGGTTTGTTGAAAGAAGATTTTTTAACAGTTTGCATGTCTATGAAAATGGAACCGCAAGACCATCATTTTGTGTATTGTCAAGAATGCCCACTGGAGAGGTCTAAGAATGATAACGTGCCTGAACCATGCAAGGGGCATCTGGTTAGGAAGTTTATCAAGGAATGCTGGAGGAAATGTGGTTGTGACATGCAATGTGGAAATCGGGTAGTGCAACGAGGTTTAAGATGTAAATTGCAGGTGTTTTTGACTCGAGAAGGAAAGGGATGGGGCGTCAGAACACTAGAAGATTTGCCTAAGGGATATTTTGTATGTGAATATGCTGGGGAGATATTAACCAATACAGAATTATATGAAAGGATTACGCAGAATAGCGGCAATGACAGGCATACGTATCCTGTAACCCTTGATGCAGACTGGGGCTCGGAAGGGGTGTTAAAGGATGAGGAGGCACTGTGCTTAGATGCAACATATAATGGAAATGTTGCAAGGTTTATCAATCATAGATGCTCTGACGCAAATCTGATAGACATTCCTGTTGAAGTGGAAACACCGGATCGTCACTATTATCATCTTGCCCTCTTTACAAACAGAAATGTGAATGCATACGAGGAGTTGACATGGGACTATGGTATTGACTTTGATGATCTTGAGCATCCTATTAAAGCATTTAAGTGTTGTTGTGGAAGTGCCTTCTGCCGTGATAGGAAACAAAAAGGAATACCACTGTTGTAG 2076 0.3868 MASNPRVIKAYDAMRSLGISDEEVKPVLKKLLQLYDRKWELIEEDNYRTLIDAYFELKEDKQAEGKRKAPISFHDGERPKQKLHLVDGDDQVSSTDNSRQGLSVEDTEIPPKTFKQEIIKPFKTSIGDMEPTTSSQAFQTKLSEVERISSLPCMAARDRKLHPEKASAAGHCEDSIDKPSNPHIHRKNISSDRHQKELMTPRTEKPKLHLGPVSTSYKGSSDVSKGNLRTKSTSALYQNVHKKDDSSACNNNNRIQKGNINIASSPLGEVKISLNFDAALGQPNFHIPDLDAVMKSMEEKYLKAYKIVEPQSSMVKLLDDLCGSYLKLGLNLNRKGSALKYANSRNVVCLPQEAVTQDEKNSFHFLGDITKGSENVKISLLDETGSEDLPKFNYIPYNVIYQDANVNISLARIADEGCCADCAGNCLSLSFPCACAQETGGEFAYTPDGLLKEDFLTVCMSMKMEPQDHHFVYCQECPLERSKNDNVPEPCKGHLVRKFIKECWRKCGCDMQCGNRVVQRGLRCKLQVFLTREGKGWGVRTLEDLPKGYFVCEYAGEILTNTELYERITQNSGNDRHTYPVTLDADWGSEGVLKDEEALCLDATYNGNVARFINHRCSDANLIDIPVEVETPDRHYYHLALFTNRNVNAYEELTWDYGIDFDDLEHPIKAFKCCCGSAFCRDRKQKGIPLL 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1577 691 MobiDBLite consensus disorder prediction 65 89 - -
Ssu7g1577 691 Pfam Pre-SET motif 369 516 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Ssu7g1577 691 Pfam Ubiquitin-binding WIYLD domain 5 59 IPR018848 GO:0018024
Ssu7g1577 691 MobiDBLite consensus disorder prediction 65 116 - -
Ssu7g1577 691 CDD SET_SETDB-like 390 658 - -
Ssu7g1577 691 Gene3D - 1 60 IPR043017 -
Ssu7g1577 691 MobiDBLite consensus disorder prediction 166 226 - -
Ssu7g1577 691 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 687 - -
Ssu7g1577 691 MobiDBLite consensus disorder prediction 166 204 - -
Ssu7g1577 691 SMART set_7 524 664 IPR001214 GO:0005515
Ssu7g1577 691 ProSiteProfiles Pre-SET domain profile. 418 521 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Ssu7g1577 691 Gene3D SET domain 369 683 IPR046341 -
Ssu7g1577 691 SUPERFAMILY SET domain 376 681 IPR046341 -
Ssu7g1577 691 SMART preset_2 366 508 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Ssu7g1577 691 MobiDBLite consensus disorder prediction 90 104 - -
Ssu7g1577 691 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 686 IPR025776 -
Ssu7g1577 691 ProSiteProfiles SET domain profile. 524 658 IPR001214 GO:0005515
Ssu7g1577 691 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 1 687 - -
Ssu7g1577 691 Pfam SET domain 536 658 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1577 Ssu-Chr7 33022366 33028269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1577 500 681 C2H2 Transcription Factor Family AT2G23740 41.711 1.91e-31 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ssu7g1577 Pre-SET 2.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1577 - - gsj:114402909 1199.88