Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1574 ATGGTGAGAACTCCTTGTTGTGAGAAGATGGGCTTGAAGAAGGGACCTTGGACACCGGAAGAAGATCAGATATTGATCTCTCATATTCAACGATATGGCCATGGAAACTGGCGGGCCCTTCCAAAACAAGCTGGTCTGTTAAGGTGTGGTAAGAGTTGTAGACTTCGTTGGATAAATTACTTAAGGCCAGATATTAAACGAGGAAAATTCAgcaaggaagaagaagagatcaTCCTCAGACTACATGCAATTCTTGGAAATAGATGGGCTACAATTGCGACAAGATTACCAGGACGAACTGACAACGAAATAAAGAATTTTTGGCACACCCATTTGAAGAAGAGGCTTGAGAGAGGTCAAGTGCACAGTATGATCAATACCTCCTTTAATCCCTTGCAAGAGGCACATGCAGCTTCTAGTGCAGGGACTTTAATAAATATGCCACAAGTAACGGTGGATGCTTCGGGTGCTACTGCTAGTGTCACTGGGAAACTATTGATTGCGAATGATAGTTTACTCTCGAGGAGAAATCCACCTATTGTAGGTCTAGGATTTTATGACGCCGTCTCTTCTGATATTTCAGGAGAAATAATTGGCAATAATTCTCACAGTGAGATCGGCGAAGAAATGGAATTTTGGTATAACATGTTTATGAACAGCCATCACAAGGGTATGAAAATGTAA 684 0.4035 MVRTPCCEKMGLKKGPWTPEEDQILISHIQRYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGKFSKEEEEIILRLHAILGNRWATIATRLPGRTDNEIKNFWHTHLKKRLERGQVHSMINTSFNPLQEAHAASSAGTLINMPQVTVDASGATASVTGKLLIANDSLLSRRNPPIVGLGFYDAVSSDISGEIIGNNSHSEIGEEMEFWYNMFMNSHHKGMKM 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1574 227 CDD SANT 69 112 IPR001005 -
Ssu7g1574 227 Gene3D - 13 66 - -
Ssu7g1574 227 CDD SANT 16 61 IPR001005 -
Ssu7g1574 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Ssu7g1574 227 PANTHER MYB TRANSCRIPTION FACTOR 1 222 - -
Ssu7g1574 227 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Ssu7g1574 227 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ssu7g1574 227 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Ssu7g1574 227 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu7g1574 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ssu7g1574 227 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 222 - -
Ssu7g1574 227 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ssu7g1574 227 Gene3D - 69 137 - -
Ssu7g1574 227 SMART sant 13 63 IPR001005 -
Ssu7g1574 227 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1574 Ssu-Chr7 32960124 32961293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1574 1 217 MYB Transcription Factor Family AT2G31180 46.862 6.93e-71 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu7g1574 Myb_DNA-binding 5.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1574 K09422 - gmx:100797027 347.051