Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1573 ATGAGGATTATGATAAAGGGCGGTGTTTGGAAAAACACCGAAGATGAAATCCTGAAAGCGGCTGTTATGAAATATGGCAAGAACCAGTGGGCTCGAATCTCGTCGCTCCTCGTTCGCAAATCCGCCAAGCAGTGCAAAGCTCGCTGGTACGAGTGGCTCGATCCTTCCATCAAAAAGACTGAGTGGACTAGAGAAGAGGATGAGAAACTGCTTCACCTTGCTAAGCTTATGCCCACACAGTGGAGAACAATTGCTCCAATTGTGGGCCGTACCCCTTCCCAGTGTCTTGAGCGGTACGAGAAGCTCCTTGATGCAGCATGTGTGAAGGATGAGAACTATGAGCCCGGCGATGATCCTCGGAAATTGCGTCCTGGTGAGATTGATCCAAACCCTGAGTCAAAACCTGCACGTCCGGATCCTGTTGATATGGATGAAGATGAAAAGGAGATGCTTTCTGAGGCACGAGCTCGTTTAGCTAACACAAAGGGCAAGAAAGCAAAAAGGAAAGCTAGGGAGAAACAGCTTGAGGAAGCCAGGAGGCTTGCTTCTCTacagaaaaaaagagaattgaAGGCTGCCGGAATTGATATTAGGCAGCggaggagaaaaaggaaaggaataGACTACAATGCTGAAATTCCATTTGAAAAAAGGCCTCCTCCAGGGTATTTTGATGTTACGGATGAAGATAGACCAGTGGAACAGCCCAAGTTCCCCACTACAATTGAAGAACTTGAAGGAAAAAGGAGGGTTGATATTGAGGCACAGTTAAGAAAGCAGGacattgcaaaaaataaaattgcgcAAAGGCAAGATGCCCCATCTGCCATACTGCATGCCAACAAGCTGAATGACCCAGAAACAGTAAGAAAGAGATCAAAACTGATGCTTCCACCACCCCAGATTTCTGATCAGGAATTGGATGAAATTGCAAAGTTGGGTTATGCCAGTGACCTTGCAGGGGCTCAAGAACTTGCTGAAGGTAGTGGTGCAACACGTGCTCTTCTGGCTAATTATGCACAAACACCTGGCCAAGGAATGACTCCTTTACGAACCCCTCAGAGAACACCAGCTGGTAAAGGAGATGCTATCATGATGGAAGCTGAAAATCTGGCCAGGTTGAGGGAGTCTCAAACACCATTGTTAGGTGGAGAGAACCCGGAGTTGCATCCTTCAGATTTTTCCGGTGTCACTCCTAAGAAAAAGGAGATTCAGACTCCAAATCCAATGCTGACTCCTTCTGCAACTCCTGGAGGTGCAGGACTTACTCCTAGAATTGGCATGACACCAGCAAGAGATGGTTTTTCTTTTAGCATGACACCAAAGGGAACTCCTCTTAGGGATGAGCTACATATTAATGAGGACATGAATATGCATGACAGCTCTAAACTTGAGCTACAGAGACAAGCTGATATGAGAAGAAGTTTGCGCTCTGGTTTAGGAAGCCTTCCCCAGCCCAAAAATGAGTACCAGATAGTGATGCAACCAGTTCCAGAAGATACCGAGGAGCCTGAGGAGAAGATTGAAGAGGATATGTCTGATAGAATAGCTAGAGAAAAGGCAGAAGAAGAGGCAAGGCAGCAGGCATTACTTAAAAAACGATCAAAAGTCCTTCAACGGGAACTTCCTAGGCCTCCTGCTGCATCATTGGAGCTTATAAGAAACTCCTTGATGAGAGCTGACGGGGACAAAAGTTCCTTTGTTCCACCAACCTCTATTGAGCAAGCTGATGAGGTGATTAGAAGGGAGCTTCTAACATTATTGGAGCATGACAATGCTAAGTATCCACTTGATGAGAAAGTGaacaaggagaaaaagaaaggagccAAACGTGCCGTAAATGGGTCTGCTGTCCCTGTGATAGAAGATTTTGAGGAAGACGAAATGAAAGATGCTGATAAGTTGATAAAGGAAGAGGCCCAGTATCTTTGTGCAGCAATGGGGCATGAAAGTGAACCCCTAGATGAATTTATTGAAGCACACAGAACCTGTCTCAATGATCTTATGTACTTTCCTACCCGTAATGCCTATGGTCTCTCAAGTGTTGCTGGGAACATGGAAAAGCTAGCAGCTTTGCAGAATAAATTTGAGAATGTGAGAAACAAATTGGATGATGGTAAGGAGAAGATGGTACGGCTTGAGAAGAAGGTGATGGTTCTCACGCAAGGCTATGAGATGAGAGTAAAAAAAAGCCTATGGCCGCAAATTGAGGCCACTTTCAAGCAGATGGACATAGCTGCAACAGAATCAGAATGCTTTATAGCTTTGCAAAAGCAGGAGCAGTTAGCAGCATCACATAGGATAAACAATCTTTTGGCTGAAGTACAGAAGCAAAAGGAACTTGAGAAAACTTTGCAAAATAGGTATGGGAGTCTAATTGAAAAGATGGAAAAGATACAAAATATCATGGACCAATACAGATTACAAGCACAACAGcaagaagaaattgaagcaAACAACCATGCTCAAGAGGCAACTGAGACCAATGCCGATGAAACGGATGTACAGGGTACAGAGAATTGTGAAGCTGTACGTCACTCCGTCGAGCATGGACATGCTCTAGCAGTTGAGTCATCCCATGATGGAACTGCTGACCTGCAAGTAGATATTGTGCGAGACCAAGCTGCTTCTGGCTCCGGTAATGACATGGATGTGGATTCTGATATAATGCAAATGACACATGATGCTGATGTTAATTTGGCAAATGCTACACCTGCTGCAGAGAATGTCGATGAAAAGCTGGCAGATATCAGTACTGACGGCTATACTGACAATGCAGAGACCATACTAGAAATGGGTTCTGCAGTGGAAATAAGTAGCCCTAATCATGATGTAGATGTGGCTGCTGTAAACTCACATGATAACAGCATGGAAGAAACCAATGCTGCTGGGGAGGAGACAAATTAG 2907 0.4338 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDIRQRRRKRKGIDYNAEIPFEKRPPPGYFDVTDEDRPVEQPKFPTTIEELEGKRRVDIEAQLRKQDIAKNKIAQRQDAPSAILHANKLNDPETVRKRSKLMLPPPQISDQELDEIAKLGYASDLAGAQELAEGSGATRALLANYAQTPGQGMTPLRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPKKKEIQTPNPMLTPSATPGGAGLTPRIGMTPARDGFSFSMTPKGTPLRDELHINEDMNMHDSSKLELQRQADMRRSLRSGLGSLPQPKNEYQIVMQPVPEDTEEPEEKIEEDMSDRIAREKAEEEARQQALLKKRSKVLQRELPRPPAASLELIRNSLMRADGDKSSFVPPTSIEQADEVIRRELLTLLEHDNAKYPLDEKVNKEKKKGAKRAVNGSAVPVIEDFEEDEMKDADKLIKEEAQYLCAAMGHESEPLDEFIEAHRTCLNDLMYFPTRNAYGLSSVAGNMEKLAALQNKFENVRNKLDDGKEKMVRLEKKVMVLTQGYEMRVKKSLWPQIEATFKQMDIAATESECFIALQKQEQLAASHRINNLLAEVQKQKELEKTLQNRYGSLIEKMEKIQNIMDQYRLQAQQQEEIEANNHAQEATETNADETDVQGTENCEAVRHSVEHGHALAVESSHDGTADLQVDIVRDQAASGSGNDMDVDSDIMQMTHDADVNLANATPAAENVDEKLADISTDGYTDNAETILEMGSAVEISSPNHDVDVAAVNSHDNSMEETNAAGEETN 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1573 968 MobiDBLite consensus disorder prediction 477 512 - -
Ssu7g1573 968 CDD SANT_CDC5_II 55 106 - -
Ssu7g1573 968 Pfam pre-mRNA splicing factor component 406 654 IPR021786 -
Ssu7g1573 968 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Ssu7g1573 968 Coils Coil 796 828 - -
Ssu7g1573 968 MobiDBLite consensus disorder prediction 399 413 - -
Ssu7g1573 968 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Ssu7g1573 968 Coils Coil 682 716 - -
Ssu7g1573 968 PANTHER - 1 848 - -
Ssu7g1573 968 Coils Coil 768 788 - -
Ssu7g1573 968 MobiDBLite consensus disorder prediction 380 447 - -
Ssu7g1573 968 Coils Coil 167 187 - -
Ssu7g1573 968 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Ssu7g1573 968 SMART sant 58 105 IPR001005 -
Ssu7g1573 968 SMART sant 6 55 IPR001005 -
Ssu7g1573 968 MobiDBLite consensus disorder prediction 113 150 - -
Ssu7g1573 968 Pfam Myb-like DNA-binding domain 10 70 - -
Ssu7g1573 968 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Ssu7g1573 968 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 848 - -
Ssu7g1573 968 Gene3D - 60 114 - -
Ssu7g1573 968 Gene3D - 5 59 - -
Ssu7g1573 968 CDD SANT 10 53 IPR001005 -
Ssu7g1573 968 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1573 Ssu-Chr7 32943793 32948576 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1573 1 835 MYB-Related Transcription Factor Family AT1G09770 76.877 0.0 1259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu7g1573 Myb_Cef 3.8e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1573 K12860 - gmx:100790369 1678.69