Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1569 ATGACGACACCACCGTCTTCCTCCTCCGCTTCGCAATCGCACTTCACCTATTCCAACCCTTCCTTCTTCCCTGTGCCCTTTCACCTTCAGCAACCCGCAACCACTCACTACGCTGCACCCTACGTCGCCGCTCCGTCCGTGCAAATCCCCGTACCTCCCGTCGTTGGTCCGGTTGCGCCGCCGCCGGTGCCTGCCGTATACTCCACCCTGCCGCAATATCAGGCACAGCAGTTATTTGAGAGGGATGCGCAGATAATAACGCCGGAGGCTCTCGAGAATGTTAAGGCAGCGATTGCGAGCAGCGACGTGGAGCACAAAACTGATACCAAGAAGAAAGCGGTTCCTCGCAAAGCTGCTGGTCAATCGTGGGAGGATTCTATCCTTGCAGAGTGGCCAGAAGATGATTATCGGCTCTTCTGTGGTGATCTTGGTAATGAAGTGAATGATGATGTTCTCTCAAAAGCGTTTTCACGATTTCCTTCCTTTAACATGGCACGAGTTGTCAGAGATAAGCGGACTGGTAAAACAAAAGGTTATGGATTTGTGAGCTTTGCCAATCCTTCTGACCTTGCTGCTGCTCTTAAAGAAATGAATGGTAAGTATGTTGGAAATCGGCCAATAAAACTACGCAAGAGTAAGTGGAAGGAGAGGACAGATTATGAAGCACTGGAGAAGCAGAAGAATCACAttcaaaagaaaccaaaaatgcCTAGGAAAGGTGTGCTGCACAAGTGA 735 0.4898 MTTPPSSSSASQSHFTYSNPSFFPVPFHLQQPATTHYAAPYVAAPSVQIPVPPVVGPVAPPPVPAVYSTLPQYQAQQLFERDAQIITPEALENVKAAIASSDVEHKTDTKKKAVPRKAAGQSWEDSILAEWPEDDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFANPSDLAAALKEMNGKYVGNRPIKLRKSKWKERTDYEALEKQKNHIQKKPKMPRKGVLHK 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1569 244 Gene3D - 85 228 IPR012677 -
Ssu7g1569 244 MobiDBLite consensus disorder prediction 223 244 - -
Ssu7g1569 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 138 208 IPR000504 GO:0003723
Ssu7g1569 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 136 214 IPR000504 GO:0003723
Ssu7g1569 244 CDD RRM_RBM42 130 212 IPR034215 -
Ssu7g1569 244 PANTHER RNA-BINDING PROTEIN 42-LIKE 35 244 - -
Ssu7g1569 244 SMART rrm1_1 137 210 IPR000504 GO:0003723
Ssu7g1569 244 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 35 244 - -
Ssu7g1569 244 SUPERFAMILY RNA-binding domain, RBD 119 216 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1569 Ssu-Chr7 32868234 32870966 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1569 138 225 Eukaryotic Initiation Factors Gene Family AT1G71770 28.409 1.63e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1569 K25079 - gmx:100800281 422.55