Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1564 ATGTGCGAAGCCCTAAAGGCGCAGTACCAGGTGTGCGAGGAGATCGGTCGCGGTCGTTTCGGCACCATCTTCCGCTGTTTCCACCCTCTCTCCAACGAGGCCTTCGCCTGCAAAGTCATCGACAAGTCCCTCCTCGCGGACCCCACCGACCGCGAGTGTCTCCAGAACGAGCCCAAATTCCTGACCCTCCTCGGCCCTCATCCGAACGTTCTCCAAATCTTCGACGTCTTCGAGGACGACGACTCTCTCTCCATCGTCACGGACCTCTGTCAATCGCACACCCTCTTCGACCGCATCGTTGATAACCCTCTCTCGGAGCCCCAGGCCGCCGTCCTCGTGAAGAGCCTTCTGGAAGCCGTCGCGCACTGCCACCGCCTCGGCGTCGCCCACCGCGACATCAAGCCCGACAATATTCTGTTCGACTCCGCGGACAACCTTAAGCTCGCGGACTTCGGGTCGGCGGAGTGGTTCGGTGACGGGAGGAGCATGAGCGGGGTTGTGGGGACGCCGTACTACGTGGCGCCGGAGGTTCTGATGGGGAGGGAGTACGATGAGAAGGTTGATGTGTGGAGTTGTGGTGTGATCTTGTACATAATGCTGGCGGGGATTCCCCCTTTTTACGGAGACTCCGCCGCGGACATCTTTGAGGCTGTCGTTAGGGctaaccttaggttcccttctagAATCTTCCGGACTGTGTCCCCCGCCGCCAAGGATCTCCTCAGGAAAATGATCTGTCGGGATGCTTCCAGAAGGTTCTCTGCAGAACAGGCCTTGAgGCACCCTTGGATCCTGAGTGCGGGTGACTCGGCTGATCTGACTTGA 825 0.5806 MCEALKAQYQVCEEIGRGRFGTIFRCFHPLSNEAFACKVIDKSLLADPTDRECLQNEPKFLTLLGPHPNVLQIFDVFEDDDSLSIVTDLCQSHTLFDRIVDNPLSEPQAAVLVKSLLEAVAHCHRLGVAHRDIKPDNILFDSADNLKLADFGSAEWFGDGRSMSGVVGTPYYVAPEVLMGREYDEKVDVWSCGVILYIMLAGIPPFYGDSAADIFEAVVRANLRFPSRIFRTVSPAAKDLLRKMICRDASRRFSAEQALRHPWILSAGDSADLT 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1564 274 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
Ssu7g1564 274 CDD STKc_CAMK 8 263 - -
Ssu7g1564 274 PANTHER SERINE/THREONINE-PROTEIN KINASE 3 272 - -
Ssu7g1564 274 SMART serkin_6 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g1564 274 Pfam Protein kinase domain 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g1564 274 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Ssu7g1564 274 ProSiteProfiles Protein kinase domain profile. 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g1564 274 Gene3D Transferase(Phosphotransferase) domain 1 93 272 - -
Ssu7g1564 274 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 2 3 272 - -
Ssu7g1564 274 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Ssu7g1564 274 SUPERFAMILY Protein kinase-like (PK-like) 8 266 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1564 Ssu-Chr7 32830680 32831601 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1564 2 263 EF-hand Containing Proteins AT2G38910 42.857 9.41e-72 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Ssu7g1564 Pkinase 4.3e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1564 - K08794 gmx:548089 503.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0205 4 3438759 3439701 Ssu7g1564 7 32830680 32831601 ECH
Ssu7g1564 7 32830680 32831601 Ssu7g1564 7 32830680 32831601 ECH