Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1563 ATGGACCAAGCAATTGTGGATGACATAATCAATCGGCTTCTTGAAGTTCGCGGCCGGCCGGGGAAGCAGGTGCAGCTGTCGGAGTCGGAGATCCGCCAGCTCTGTGCCGCTTCCAGAGAAATTTTCTTGCAGCAACCTAATTTGTTGGAGCTTGAAGCACCCATTAAGATTTGCGGTGATGTACATGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGTGGATTACCCCCTGAGGCCAACTACTTATTTTTGGGGGATTATGTGGATCGAGGGAAGCAGAGTTTGGAAACAATATGCCTTCTCCTagcatacaaaataaaatatcctgagaattttttccttttgaggGGTAACCATGAATGTGCTTCTATTAACCGTATATATGGATTTTATGATGAGTGTAAAAGAAGGTTCAATGTAAGATTATGGAAGACATTTACAGAATGCTTCAATTGCCTGCCTGTGGCTGCACTCATTGATGAAAAGATTTTGTGCATGCATGGGGGTCTTTCTCCTGACTTACTTAATTTGGACCAGATTAGAAATCTACAGCGGCCCACTGATGTGCCTGATACAGGTTTGCTTTGTGATCTCCTCTGGTCAGACCCAAGCAAAGAGGTTCAAGGTTGGGGAATGAATGACAGGGGAGTTTCATATACATTTGGTGCTGATAAGGTCTCTGAGTTTCTTCAGAAACATGATTTGGATCTTATTTGTCGAGCTCATCAGGTGGTGGAGGATGGATATGAGTTCTTTGCTAACCGACAGCTTGTAACAATATTTTCGGCACCTAATTATTGTGGGGAGTTTGACAATGCTGGTGCTATGATGAGTGTTGATGAGACACTAATGTGCTCTTTCCAAATATTAAAGCCAGCTGACAAAAAAGCAAAGCTCAATTTTGGAAGTACTGCCACTACTAAGCCAGGAAACTCTCCAGCAGGTGTAAAGTCCTTCCTGGGTACAAAAGTATGA 981 0.4149 MDQAIVDDIINRLLEVRGRPGKQVQLSESEIRQLCAASREIFLQQPNLLELEAPIKICGDVHGQYSDLLRLFEYGGLPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKTFTECFNCLPVAALIDEKILCMHGGLSPDLLNLDQIRNLQRPTDVPDTGLLCDLLWSDPSKEVQGWGMNDRGVSYTFGADKVSEFLQKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADKKAKLNFGSTATTKPGNSPAGVKSFLGTKV 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1563 326 CDD MPP_PP1_PPKL 6 294 - -
Ssu7g1563 326 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 320 - -
Ssu7g1563 326 Pfam Calcineurin-like phosphoesterase 54 246 IPR004843 GO:0016787
Ssu7g1563 326 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Ssu7g1563 326 SUPERFAMILY Metallo-dependent phosphatases 17 299 IPR029052 -
Ssu7g1563 326 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Ssu7g1563 326 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 1 320 - -
Ssu7g1563 326 SMART pp2a_7 26 296 IPR006186 GO:0016787
Ssu7g1563 326 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Ssu7g1563 326 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Ssu7g1563 326 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Ssu7g1563 326 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Ssu7g1563 326 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Ssu7g1563 326 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Ssu7g1563 326 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Ssu7g1563 326 Gene3D - 1 305 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1563 Ssu-Chr7 32795864 32801282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1563 55 239 Calmodulin-binding Proteins AT5G63870 32.273 9.96e-28 108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0204 4 3423204 3427682 Ssu7g1563 7 32795864 32801282 ECH
Ssu7g1563 7 32795864 32801282 Ssu7g1563 7 32795864 32801282 ECH