Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1561 ATGGATACCCCATTCTTCACTCCATGCCCAAATTTCGGATACCCTTCCGACCAGTCTTCTATATTTGCAGCACATAATTACGAATCTCTTCCCTCTAATGAAAATGGCTCCCAGGTAATGCTTCTTGACTCCTTTGAAGGAACGCCGTGGATACCTCGTGGCGAAGAGAAACAAAAGGTTTCGTACAGAGGGGTCCGAAGGCGGGGATGCGGTAACTACGCGGCGGAGATAAGGGACTCTACGAGGAATGGGGCGAGGGACCAAGCTGCATTAGCAACGCGCGGCCACAACGCTGTTCTCAATTTCCCACCTCAACTCGTTCTCCAATCGCTTCACAACATGGACTTTAGCTTCCGAAGAGGGTACTCTCCCGTTTTGGAACTAAAGAAGCGCAACTTCATGAACAGAAAGTTGAGGAAGATGAGAGAGAATCACGAACGGGTTGGAATGGAAAATGTTGTCGTATTGGAGGATTTGGGAGCAGATTATTTGGAAGAACTTCTCACACTGTGCGAACATTAA 522 0.4808 MDTPFFTPCPNFGYPSDQSSIFAAHNYESLPSNENGSQVMLLDSFEGTPWIPRGEEKQKVSYRGVRRRGCGNYAAEIRDSTRNGARDQAALATRGHNAVLNFPPQLVLQSLHNMDFSFRRGYSPVLELKKRNFMNRKLRKMRENHERVGMENVVVLEDLGADYLEELLTLCEH 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1561 173 PANTHER DNA-BINDING DOMAIN 41 170 IPR044808 GO:0003700|GO:0009873
Ssu7g1561 173 SUPERFAMILY DNA-binding domain 62 104 IPR016177 GO:0003677
Ssu7g1561 173 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B-LIKE 41 170 - -
Ssu7g1561 173 SMART rav1_2 61 109 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1561 Ssu-Chr7 32769740 32770309 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1561 30 173 AP2-EREBP Transcription Factor Family AT3G23240 40.000 1.59e-31 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1561 K14516 - pop:7487696 142.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0203 4 3406848 3407483 Ssu7g1561 7 32769740 32770309 ECH
Ssu7g2217 7 43744929 43745663 Ssu7g1561 7 32769740 32770309 ECH
Ssu7g1561 7 32769740 32770309 Ssu7g1561 7 32769740 32770309 ECH