Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1555 ATGGCGAACCGGTGGTGGACCGGGTCCGTGGGTCTCACCAACTCAGGCGACTCGATGAAAAAACCGGATCTGGGGTTTTCCATGAACGAGAGTGCGGTGACGGGAAGCCACAtaggggaagaagaagaagaggagaaagaaaacaGCGACGAGCCCAAAGAGGGAGCCATCGAAGTGGCCACCACGCGCCGCCAGAGGGGGCGTCCGGCGGGGTCGAAGAACAAGCCGAAACCGCCGATATTCGTGACCAGAGACAGCCCTAACGCGCTGCGAAGCCACGTCATGGAGGTCGCCAGCGGAGCCGACATCGCCGATTGCGTGGCTCAGTTCGCGAGAAGGCGCCAACGCGGCGTGAGCATTCTTAGCGGCAGCGGCACCGTCGTCAACGTCACCTTCCGCCAGCCCACGGCGCCCGGCGCCGTCATGGCGCTCCACGGCCGGTTCGATATCCTCTCGCTCACCGGCTCGTTTCTGCCCGGACCGTCCCCTCTCGGCGGCACCGGTTTAACCATTTACCTCGCCGGAGGCCAGGGGCAGATCGTCGGCGGCGGGGTGGTGGGCCCGCTGGTGGCGGCGGGGCCGGTTTTGATAATGGCGGCTACGTTTTCCAATGCAACGTACGAGAGATTGCCTTTGGAGGACGATGATCAGGAACAACACGGTGGTGGCGGTGGGTCTCCGCCGGGGATGGCCGGCGGTCCCGCCGAGGCGTCGTCGTCGATTTCGGTGTATAATAACAATCATCATAACAATAATGTTCCTCCGAATTTGGGTCTTCCGAATGGGCAACAGCTGAACCATGAAGCTTTTTCTCCTTGGGGTCATGCTTCTCATGCCAGACCTCCTTACTAA 852 0.5962 MANRWWTGSVGLTNSGDSMKKPDLGFSMNESAVTGSHIGEEEEEEKENSDEPKEGAIEVATTRRQRGRPAGSKNKPKPPIFVTRDSPNALRSHVMEVASGADIADCVAQFARRRQRGVSILSGSGTVVNVTFRQPTAPGAVMALHGRFDILSLTGSFLPGPSPLGGTGLTIYLAGGQGQIVGGGVVGPLVAAGPVLIMAATFSNATYERLPLEDDDQEQHGGGGGSPPGMAGGPAEASSSISVYNNNHHNNNVPPNLGLPNGQQLNHEAFSPWGHASHARPPY 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1555 283 ProSiteProfiles PPC domain profile profile. 87 228 IPR005175 -
Ssu7g1555 283 PIRSF ESCAROLA 12 283 IPR014476 GO:0003680
Ssu7g1555 283 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 9 283 - -
Ssu7g1555 283 CDD DUF296 91 174 IPR005175 -
Ssu7g1555 283 MobiDBLite consensus disorder prediction 1 85 - -
Ssu7g1555 283 MobiDBLite consensus disorder prediction 1 16 - -
Ssu7g1555 283 MobiDBLite consensus disorder prediction 238 270 - -
Ssu7g1555 283 Gene3D - 90 219 - -
Ssu7g1555 283 MobiDBLite consensus disorder prediction 214 283 - -
Ssu7g1555 283 SUPERFAMILY AF0104/ALDC/Ptd012-like 87 216 - -
Ssu7g1555 283 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 9 283 IPR014476 GO:0003680
Ssu7g1555 283 Pfam Plants and Prokaryotes Conserved (PCC) domain 91 204 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1555 Ssu-Chr7 32690618 32691469 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1555 1 283 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 52.805 5.73e-84 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1555 - - gmx:100795097 410.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1555 7 32690618 32691469 Ssu7g1555 7 32690618 32691469 ECH