Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1553 ATGGaaactcttcttcttcttcttcttctgttgttgttgttttgttatctTATTCTATGTGCTTCTGCCACCGATGTTGAATTTGACAACTGCAACTGTGATGACGGGGAAGGGATTTGGAGCATACATAGCATCCTCGTTGGCCAAAAAGTCAGTGATTTTTTCATTGCCGTTGCGTATTTTTCCATACCCATTGAACTCCTTTACTTTGTTAGCCGTTCCAACGTTCCATTCAAATTGCTCTTTCTTCAATTTATTGCCTTCATAGTGCTATGTGGTTTGACCCATTTACTCAATGCATATTCCTATCATGGTCCTCCCTCCTTCCAGTTGCTGCTCTCCCTAACCGTCGCTAAATTCCTCACTGCTCTTGTTTCCTGTGCAACTGCTTTGACCCTTCCCCCTCTCATCCCTCTTCTCCTCAAAATCAAAGTTAGGGAGCTCTTCCTGAGACAGAATGTGATGGAGTTGGGCCAAGAGGTTGGAATGATGAAGAAACAGAAGGAGGCAAGCTGGCATGTTAGGATGCTCACTAGGGAAATTAGGAAGTCTCTTGATAAGCATACAATCTTGTACACCACCCTTGTTGAGCTTTCAAAGGCATTGGATTTGCATAATTGTGCGGTTTGGATGCCGAATGAGGACCGGCGAGAGATGCACTTAACCCATGAACTGAAAACAAACTCTGCCAAGAATTTTCAGAATTCTATTCCTGTGAACGACCCTGATGTATTGGAGATAAGAAAGACTAAGGGGGTGAGGATTTTGAGGCCGGATTCTGCTCTAGGAGCTGCGAGTAGTGGTGGTGCTGGGGAGCTGGCTGCTGTGGCAGCTATTCGCATGCCGTTACTTCATGTATCGAATTTCAAAGGAGGGACGCCGGAGTTGGTTGAGACATGTTATGCTATACTGGTTTTAGTTCTGCCAAGTTCAAGCTCTAGGGTTTGGACCTACCATGAGATGGAGATAGTTGAAGTGGTTGCTGATCAGGTGGCTGTTGCCCTGTCTCATGCGTCTGTTCTTGAAGAGTCTCAGCTAATGAGACAGAAGCTGGAAGAGCGAAACCGAGCATTGCAACAGGCTAAAAAGAATGCAATGATGGCCAGCCAGGCAAGGAAGTCGTTTCAGAAGGTGATGAGCCATGGAATGCGGAGGCCTATGCATTCTATTCTGGGGATGCTTTCATTGTTTCAAGAGGATACTTTGAGATCTGAGCAGAAGATTATTGGTGATACAATGTTGAAAGTTGGCTATGTGCTTTCAAGTTTGATTAATGATGTAATGGAGATTTCAGAAAATGAAAAGGGAGGCTTCCGGTTAGAGATGAAACCTTTCCTTCTGCATTCGATGTTGAGGGAAGCTGCTTGCATTGCCAAGTGCTTGTGTGTATATGAAGGctttggttttgaaattgatGTCCAGAAGTCTTTGCCTGAACAGGTTATGGGTGATGAGGCAAGGACTTTTCAAGTAATTTTACACATGATTGGCTATTTGTTGAACACAAATGACAAGAGGACTCTAAGTTTTCGAGTTTTTCTTGAAAGTGATGGTGGAGACAAggatgataaaaattttggaatatgGAAATCAAGCAGTCAAACTGAGTATgtacatataaaatttgattttcagaTTACTGATAGTGCTCATTCAGATGAAGCAATTTCAACAATACATTATACTGGTAGGAGGCAGTACTACAACAACGAACCTAATGATGGCCTGAGCTTCAGCATGTGCAAAAAGTTAGTACAGATGATGCGAGGTAATATATGGATATCACCGAACTCCATGGGTTTGGTGCCAGGCATGACACTTCTTCTCAACTTTCAAATAGGACCATCACTTGAAAAATCCATATTTGCACCTAAAGATTCTTCAAACTCACAACTCAGAGGCCTTAAGGTTGTGTTAGCCGAGGATGATGGTGTAAACAGGACCGTGACCAAGAAGCTACTTGAGAAGCTTGGTTGTCAAGTAACTGCTGTTTCATCAGGGTTTGAGTGCCTGAGTGCTATAAGTGGCTCTGGTGACTCGTTCAGAATTATCCTGTTGGATCTTCACATGCCTGAAACGGATGGTTTTGAAGTGGCAAAGAGGATCCGGAAGTTCCATAGTCGTAGTTGGCCCTTGATTATAGCTCTTATAGCAAGTGCAGAAGAACATGTGAAGGAGAAATGCCTACTGGCAGGAATGAATGGATTGATCCAAAAACCTATTGTACTTCATCAGATAGCAGATGAACTTAGAACAGTCCTACAAAGAGCAGGTGAAAAACTGTGA 2286 0.416 METLLLLLLLLLLFCYLILCASATDVEFDNCNCDDGEGIWSIHSILVGQKVSDFFIAVAYFSIPIELLYFVSRSNVPFKLLFLQFIAFIVLCGLTHLLNAYSYHGPPSFQLLLSLTVAKFLTALVSCATALTLPPLIPLLLKIKVRELFLRQNVMELGQEVGMMKKQKEASWHVRMLTREIRKSLDKHTILYTTLVELSKALDLHNCAVWMPNEDRREMHLTHELKTNSAKNFQNSIPVNDPDVLEIRKTKGVRILRPDSALGAASSGGAGELAAVAAIRMPLLHVSNFKGGTPELVETCYAILVLVLPSSSSRVWTYHEMEIVEVVADQVAVALSHASVLEESQLMRQKLEERNRALQQAKKNAMMASQARKSFQKVMSHGMRRPMHSILGMLSLFQEDTLRSEQKIIGDTMLKVGYVLSSLINDVMEISENEKGGFRLEMKPFLLHSMLREAACIAKCLCVYEGFGFEIDVQKSLPEQVMGDEARTFQVILHMIGYLLNTNDKRTLSFRVFLESDGGDKDDKNFGIWKSSSQTEYVHIKFDFQITDSAHSDEAISTIHYTGRRQYYNNEPNDGLSFSMCKKLVQMMRGNIWISPNSMGLVPGMTLLLNFQIGPSLEKSIFAPKDSSNSQLRGLKVVLAEDDGVNRTVTKKLLEKLGCQVTAVSSGFECLSAISGSGDSFRIILLDLHMPETDGFEVAKRIRKFHSRSWPLIIALIASAEEHVKEKCLLAGMNGLIQKPIVLHQIADELRTVLQRAGEKL 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1553 761 Gene3D - 435 613 IPR036890 -
Ssu7g1553 761 CDD HATPase_ETR2_ERS2-EIN4-like 477 609 - -
Ssu7g1553 761 CDD HisKA 369 431 IPR003661 GO:0000155|GO:0007165
Ssu7g1553 761 SMART HisKA_10 371 436 IPR003661 GO:0000155|GO:0007165
Ssu7g1553 761 PIRSF Ethylen_sen_hybr_HK 3 761 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Ssu7g1553 761 Pfam Response regulator receiver domain 637 749 IPR001789 GO:0000160
Ssu7g1553 761 SMART gaf_1 186 345 IPR003018 GO:0005515
Ssu7g1553 761 CDD REC_ETR-like 635 750 - -
Ssu7g1553 761 Gene3D - 337 434 - -
Ssu7g1553 761 SUPERFAMILY GAF domain-like 189 338 - -
Ssu7g1553 761 ProSiteProfiles Histidine kinase domain profile. 378 615 IPR005467 -
Ssu7g1553 761 Pfam GAF domain 188 335 IPR003018 GO:0005515
Ssu7g1553 761 ProSiteProfiles Response regulatory domain profile. 636 754 IPR001789 GO:0000160
Ssu7g1553 761 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 356 436 IPR036097 GO:0000155|GO:0007165
Ssu7g1553 761 PANTHER ETHYLENE RECEPTOR 7 754 - -
Ssu7g1553 761 Gene3D - 164 336 IPR029016 -
Ssu7g1553 761 PANTHER TWO-COMPONENT HISTIDINE KINASE 7 754 - -
Ssu7g1553 761 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 440 597 IPR036890 -
Ssu7g1553 761 Coils Coil 341 371 - -
Ssu7g1553 761 Gene3D - 618 758 - -
Ssu7g1553 761 SUPERFAMILY CheY-like 631 756 IPR011006 -
Ssu7g1553 761 SMART REC_2 635 750 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1553 Ssu-Chr7 32661958 32666572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1553 25 759 Miscellaneous Gene Families AT3G04580 61.631 0.0 912
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu7g1553 GAF 7.6e-12 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1553 K14509 - gmx:100101892 1353.58