Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1549 ATGGCTTCTCTGTCTTGCTCAGCCAACGACCTCGCCCCACTCATCAACCACACAGCCGCCGCCAACTACCTCTGCGCCCAATTCGATGCCATTTCGAAAAAACTCAACGACACCACCTACGCCGTCGACAACACCTACCTTCTCTTCTCGGCCTACCTCGTCTTCGCCATGCAGCTCGGTTTCGCCATGCTCTGCGCCGGCTCCGTCCGAGCCAAGAACACCATGAACATCATGCTCACCAACGTCCTCGACGCCGCCGCCGGCGGCCTCTCCTACTACCTCTTCGGCTTCGCATTCGCCTTCGGCGCCCCCTCCAACGGCTTCATCGGCCGCCACTTCTTCGGCCTCAGGCGCTACCCCTGGCCCTCCGGCGACTACAGCTTCTTCCTCTACCAGTGGGCCTTCGCCATCGCCGCCGCCGGAATCACCAGCGGGTCCATCGCCGAAAGGACGCAGTTCGTCGCCTACCTCATCTACTCTTCCTTCTTAACCGGCTTCGTTTACCCCATCGTCTCGCATTGGTTCTGGTCCTCCGACGGTTGGGCCAGCCCCACCCGAAACCACGGAAATCTTTTATTCGGGTCCGGAGTCATTGACTTTGCGGGCTCGGGCGTGGTCCACATGGTTGGCGGCATAGCGGGCCTCTGGGGGGCTTTTATTGAAGGCCCAAGAATAGGCCGCTTCGACCGGACGGGCCGGTCCGTTGCATTACGTGGCCACAGCGCCTCGTTGGTTGTGTTGGGTTCGTTTTTGTTATGGTTCGGCTGGTACGGCTTCAACCCCGGTTCGTTCCTGACTATAGCGAAGGGGTACGGCGGGGGGTATTATGGTCAATGGAGCGCGATAGGGAGGACAGCTGTCACCACGACATTGGCCGGGAGCACTGCGGCTCTCACAACGCTCTTCGGCAAGCGGTTGTTGGTGGGCCACTGGAACGTGATTGACGTGTGCAACGGCCTGCTTGGCGGGTTCGCCGCAATCACCTCGGGCTGCTCCGTTGTGGAACCCTGGGCCGCGATTGTGTGTGGGTTTATGGCGGCGTGGGTTTTGATTGGGCTCAATAAGCTGGCGGCGAAGGTGGAGTACGATGACCCGTTGGAGGCGGCGCAGCTCCACGGCGGGTGCGGCGCGTGGGGGGTTCTGTTCACGGGATTGTTTGCGAAGAGGGAGTACGTGGAGGAGGTTTATGGAGTTGGGAGGCCGTTCGGGGTGTTTATGGGTGGCGGTTGGAGGCTGGTGGCGGCGCAAGCGATTCAGATATTGGTGGTGTGTGGGTGGGTTACGGCCACCATGGCGCCGTTGTTTTATGGGCTTCATAAGATGAATTTGCTGAGGATATCTAGCGATGATGAGACTGCGGGGATGGATTTGACGAGGCATGGTGGGTTTGCTTATGCATaccatgatgatgatgatgatggttcCAGCAGGGGAGCGGGATTCATGATGCGTAAAATAGAGCCCGCTAGTGCGATTCCTTCACCCACCACTGCACCGCAAGTGTGA 1506 0.587 MASLSCSANDLAPLINHTAAANYLCAQFDAISKKLNDTTYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGFAFAFGAPSNGFIGRHFFGLRRYPWPSGDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFWSSDGWASPTRNHGNLLFGSGVIDFAGSGVVHMVGGIAGLWGAFIEGPRIGRFDRTGRSVALRGHSASLVVLGSFLLWFGWYGFNPGSFLTIAKGYGGGYYGQWSAIGRTAVTTTLAGSTAALTTLFGKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEPWAAIVCGFMAAWVLIGLNKLAAKVEYDDPLEAAQLHGGCGAWGVLFTGLFAKREYVEEVYGVGRPFGVFMGGGWRLVAAQAIQILVVCGWVTATMAPLFYGLHKMNLLRISSDDETAGMDLTRHGGFAYAYHDDDDDGSSRGAGFMMRKIEPASAIPSPTTAPQV 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1549 501 Pfam Ammonium Transporter Family 46 465 IPR024041 GO:0008519|GO:0016020|GO:0072488
Ssu7g1549 501 ProSitePatterns Ammonium transporters signature. 199 224 IPR018047 GO:0008519|GO:0016020|GO:0072488
Ssu7g1549 501 PANTHER AMMONIUM TRANSPORTER 1 497 - -
Ssu7g1549 501 TIGRFAM amt: ammonium transporter 43 465 IPR001905 GO:0008519|GO:0016020|GO:0072488
Ssu7g1549 501 Gene3D Ammonium transporter AmtB like domains 21 479 IPR029020 -
Ssu7g1549 501 PANTHER AMMONIUM TRANSPORTER 1 497 - -
Ssu7g1549 501 SUPERFAMILY Ammonium transporter 40 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1549 Ssu-Chr7 32608519 32610024 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1549 22 501 Inorganic Solute Cotransporters AT1G64780 79.175 0.0 775
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1549 K03320 K07573 gmx:100797209 875.93