Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1547 ATGGAAAAGGAATCAGAAGCGAAGGGAGAAGCAGGGGTGGCAAAAAGGCCACGCTCACGAAAAGGAAAAGGGGGACCCGAGAATGCCATGTGCACGTACAGAGGAGTGAGGCAGAGGACATGGGGAAAGTGGGTTGCCGAAATACGAGAGCCCAAACGTGGTGCTAGGCTTTGGCTCGGCATCTTCAACACCTCCCTTCAAGTTGCAATTGCCTGCGACGACGCTGCAAGAAGGCTCTATGGTGCATCGGCCAAGCTCAATTTACCTGCACCTCCCTCTCCACCAACCGCACCTATTAACAATGACGCTTCTCATGATCACAATTTGATCATTCCTACTACACAGCCTGCTGCTCCAAGCTTGGACTCCAAAACTGATGAGACTCCTAGTGATCTTAATCTTACGTTGCTGGACGACATGAGCAATGAGGGGCTGTTTTGGGAGACTAGTTTGGACCTTGATGCCTGGACTACTAGTAACTTCATGAGGGGTGATTTTCTGGAACTAAATACAAACAGATTTAATCCATTTCAGCTCATGAGTAATCAGCGTTTAATAAAAGTGGCACCTTCATCCTTACCCTTGCTGTATATTTTTGATAAGTACGACCTCTCTCTAGCTATCTCTAGTCTTgttccaatttatttatgtaattttcttcCTTGA 666 0.455 MEKESEAKGEAGVAKRPRSRKGKGGPENAMCTYRGVRQRTWGKWVAEIREPKRGARLWLGIFNTSLQVAIACDDAARRLYGASAKLNLPAPPSPPTAPINNDASHDHNLIIPTTQPAAPSLDSKTDETPSDLNLTLLDDMSNEGLFWETSLDLDAWTTSNFMRGDFLELNTNRFNPFQLMSNQRLIKVAPSSLPLLYIFDKYDLSLAISSLVPIYLCNFLP 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1547 221 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 11 131 - -
Ssu7g1547 221 MobiDBLite consensus disorder prediction 86 107 - -
Ssu7g1547 221 MobiDBLite consensus disorder prediction 1 30 - -
Ssu7g1547 221 Pfam AP2 domain 32 81 IPR001471 GO:0003700|GO:0006355
Ssu7g1547 221 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Ssu7g1547 221 CDD AP2 31 87 IPR001471 GO:0003700|GO:0006355
Ssu7g1547 221 SUPERFAMILY DNA-binding domain 32 89 IPR016177 GO:0003677
Ssu7g1547 221 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Ssu7g1547 221 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
Ssu7g1547 221 Gene3D AP2/ERF domain 32 90 IPR036955 GO:0003700|GO:0006355
Ssu7g1547 221 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Ssu7g1547 221 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1547 Ssu-Chr7 32573774 32574439 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1547 16 104 AP2-EREBP Transcription Factor Family AT5G18450 64.045 1.49e-34 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu7g1547 AP2 7.6e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1547 - - egr:104432554 125.176