Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1542 ATGACCAGCAAGGAGGAAGAACTTGCACTGAAGGACAAGTTGCGGGAATTGGTTAAGAGTATCGTGGAGAGCGATGACTACACCGTACACGCCGCCGACGAGGCCATCCTTGCTCTTTCTGCTCTCAAGGATTTGAAATGCACCGCCTCTCTCTCACGCAACTTGGACAACATACCTGTTCCTCCACACTTTCTATGCCCCCTCTCTGGACACTTGATGACAGATCCTGTTATCTTGGCCACCGGACAGACTTTTGATCAGCCATTCATTCAGAGGTGGCTGAATGAGGTCCAGAGAATTTGCCCTCAGACGCAGCAAGTCCTCTCTCACTCTATCCTCACTCCTAATTGCTTGCTCCAAGGCATGATTTCGCGGTGGTGTGAAGAGCACGGAGTTGAGCTACCAAAGCCCGTTTGGGACATTCACGATGAGCAAGTAACGGATGCACACAGACACCGTTTGCGTTCACTGCTTTACAAGCTGTCGCTGTCTGTTTCCGAACAAAAAGAAGCCGCAAAAGAGCTTCGGCAGTTGGCAAAGCGAATGCCCGCATTCCGAACACTCTTTGGAGACTCGGAAGTGGTTCATCTATTGCTCAGTCCGTTATCACCCGGCACGGATTGTGTGGACCCCGAGCTCCACGAGGACTTGATCACAACTCTTCTAAATCTCTCAATTCACGATGACAACAAGAGAGTCTTTGGAGAGGACGAAAAGGTCATTTCCCTGCTTATTGATTCGTTGAAATCAGGAACCGTTCAAACAAGGAGCAATGCAGCCGCGGCTATTTTCTCTATGTCAGCTCTTGATTCCAACAGGCACATCGTTGGAAAATCTGGAGCTATAAAATACTTGGTGGACCTATTAGAGGAGGGGCATCCATCAGCCATGAAAGATGCTGCTTCAGCCTTGTTCAAACTATGCTTTGCGCACGAAAACAAAGGGAGGACCGTGCGAGAAGGGGCAGTGCAGGTTATTCTTAGCAAGATCGTTGATCACGTTCTGGTTGATGAGTTGTTGGCATTACTAGCACTCCTCTCTACACATTCCAAGGCCGTTGAAGCATTGGTGAATCATGGTGCTGTCCCCTTCTTGTTAGATATCTTAAGGGAAAGCACGTCAGAACGCGTCAAGGAAAACTGTGTTGCGATTCTATATACAATCTGTTTCGgtgatagagaaaaaaggaaggaaataagAGAGGATGAAATGGCCAATGGCACACTGTCTAAGCTTGCACAATGCGGGTCTTCAAGGGCCAAAAGGAAAGCTAATGCTATTCTTGACAGACTCAGCATAGCTCAATCCTCAACGCAGGGTGTGTTTGGTATCCgccaatga 1341 0.472 MTSKEEELALKDKLRELVKSIVESDDYTVHAADEAILALSALKDLKCTASLSRNLDNIPVPPHFLCPLSGHLMTDPVILATGQTFDQPFIQRWLNEVQRICPQTQQVLSHSILTPNCLLQGMISRWCEEHGVELPKPVWDIHDEQVTDAHRHRLRSLLYKLSLSVSEQKEAAKELRQLAKRMPAFRTLFGDSEVVHLLLSPLSPGTDCVDPELHEDLITTLLNLSIHDDNKRVFGEDEKVISLLIDSLKSGTVQTRSNAAAAIFSMSALDSNRHIVGKSGAIKYLVDLLEEGHPSAMKDAASALFKLCFAHENKGRTVREGAVQVILSKIVDHVLVDELLALLALLSTHSKAVEALVNHGAVPFLLDILRESTSERVKENCVAILYTICFGDREKRKEIREDEMANGTLSKLAQCGSSRAKRKANAILDRLSIAQSSTQGVFGIRQ 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1542 446 SUPERFAMILY ARM repeat 164 434 IPR016024 -
Ssu7g1542 446 Pfam Armadillo/beta-catenin-like repeat 351 389 IPR000225 GO:0005515
Ssu7g1542 446 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 5 438 - -
Ssu7g1542 446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 133 IPR013083 -
Ssu7g1542 446 Gene3D - 156 442 IPR011989 -
Ssu7g1542 446 CDD RING-Ubox_PUB 64 106 IPR045210 -
Ssu7g1542 446 Pfam U-box domain 60 130 IPR003613 GO:0004842|GO:0016567
Ssu7g1542 446 SUPERFAMILY RING/U-box 54 137 - -
Ssu7g1542 446 PANTHER U BOX DOMAIN-CONTAINING 5 438 - -
Ssu7g1542 446 SMART arm_5 349 390 IPR000225 GO:0005515
Ssu7g1542 446 SMART arm_5 269 309 IPR000225 GO:0005515
Ssu7g1542 446 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 280 322 IPR000225 GO:0005515
Ssu7g1542 446 ProSiteProfiles U-box domain profile. 59 133 IPR003613 GO:0004842|GO:0016567
Ssu7g1542 446 SMART Ubox_2 63 126 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1542 Ssu-Chr7 32468066 32469883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1542 122 439 U-box Gene Family AT3G07360 54.630 1.59e-107 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1542 - - gmx:100806132 654.055