Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1540 ATGAATTGCTTCCCTTGCTGTGCCCCTAAGAAAAGCCATAGCAAGAGGGAGCATGGTTCTCCTCCACCACCGGAACCTGTTACAACAAAAACATCAGAtatgaagaaacaaaaaccagACGAGCAAAACCAAGTTGACGCTGCCAGTATTAAGGCACAGAATTTCACTTTTCGTGAGCTAGCAACAGCAACAAAGAATTTCCGTCAGGATTGCCTGATGGATGAAGGCGGTTTTGGCAGAATATACAAAGGGATAATTCCTGCCACCGGCCAGGTTGTGGCCGTGAGGCAACTCGACCGAAATGGGATGCAAAGCAGTAAGGAATTTCTGGCTGAGGTTTCGGAGCTAAGTCTCTTGCACCATGAAAATCTGGTCAATTTCATTGGTTATTGTGCTGATGGGGATCAACGTCTTTTGGTGTACGAGTTATTTCATGCGCGCACTCTAGAAAACCGTCTTTTTGATCATAAAGCAGATGAAGGTCCATTAAATTGGTTTGatagaatgaaaatagtagCGAGTGCTTCTAAAGGACTAGGGTACTTGCATGAGAGTGCGAATCCCCCGGTTATATTCCGGGACTTGAAAGCGTCCAACATCTTGGTGGACAATGATCTCCATGCTAAACTATGTGATTTTGGATTGACCAAGCTTGCTGGTGGAAACAAGATGAACAATGCACCTCCAAGACTTATGGGTACCTATGGTTACTGTGCACCAGAGTATGTAAGAGCAGGCCAACTCACCATGAAATCAGACGTATACAGTTTCGGAGTTGTCTTGCTAGAGCTCATAACTGGACGAAGAGCCATCGACACCACAAGACCAAACGACGAGCAAAATCTAGTTTCATggGCACAACCCTTATTCAGGAATCCTAAAAGATATCCAGACATGGCAGATCCGCTTCTTAAAAAGAATTTCCCAGAAAAAGATCTGAATCAAGTTGTTGCAATAGCATCCATGTGCTTACAGGAGGAAGCAGAAGCTCGTCCTTTGATCAGTGACGTTGTAACTgctcttaattttctttccgcGGCTCCTGCTGTCTCCAAGAAGAGTAGTCCTGGTGAAAGCGAAAGCGAGGTTGAGAGTGAGAGTGGAAGTGAAGCAAAGTTTAGTAAGGGGAGCCATAGATCAAGCCGCAAAAGCCGCACCATATCAAGGAAGGGAACACTTGGTTCAGATTCAGGAGATGGAAACGTTTCTTCCAGTAGCAAAAGCAGCAGGAAATCGCACAGCAAAAAATCTTCTGCGAAAGTTTTAAGCCAGAAGAGCATCAGAAAATCTTCCCACAGAGATTTGAGCCAAAAGAGCAGTAGAAAATCATCTGCGAGAGTTTTGAGCCACATGAGTAGTAGCTTGGCATCGGAGGATGAAAGCATTTCCTCAAGCTGCCGTAGCAGCAGTGTGGCATCTGAGGATGAAGGGGTTCTGTCAGAACGTAGCAGCATGAGGGTATCACAAGGGAACGTATCTTTTGGCCTTATCAGCAGTGGGAGTGTTCACTCAGACGCCAATAGCAGCAGAAGGACAGAGGACGAGAGCACGCATTATGCTAGCAGCTTGGGGACTGATGAGGGAAGTGTTCATTCACGATAA 1602 0.4432 MNCFPCCAPKKSHSKREHGSPPPPEPVTTKTSDMKKQKPDEQNQVDAASIKAQNFTFRELATATKNFRQDCLMDEGGFGRIYKGIIPATGQVVAVRQLDRNGMQSSKEFLAEVSELSLLHHENLVNFIGYCADGDQRLLVYELFHARTLENRLFDHKADEGPLNWFDRMKIVASASKGLGYLHESANPPVIFRDLKASNILVDNDLHAKLCDFGLTKLAGGNKMNNAPPRLMGTYGYCAPEYVRAGQLTMKSDVYSFGVVLLELITGRRAIDTTRPNDEQNLVSWAQPLFRNPKRYPDMADPLLKKNFPEKDLNQVVAIASMCLQEEAEARPLISDVVTALNFLSAAPAVSKKSSPGESESEVESESGSEAKFSKGSHRSSRKSRTISRKGTLGSDSGDGNVSSSSKSSRKSHSKKSSAKVLSQKSIRKSSHRDLSQKSSRKSSARVLSHMSSSLASEDESISSSCRSSSVASEDEGVLSERSSMRVSQGNVSFGLISSGSVHSDANSSRRTEDESTHYASSLGTDEGSVHSR 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1540 533 Gene3D Phosphorylase Kinase; domain 1 27 143 - -
Ssu7g1540 533 ProSiteProfiles Protein kinase domain profile. 67 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g1540 533 MobiDBLite consensus disorder prediction 441 506 - -
Ssu7g1540 533 MobiDBLite consensus disorder prediction 518 533 - -
Ssu7g1540 533 MobiDBLite consensus disorder prediction 1 43 - -
Ssu7g1540 533 SMART serkin_6 67 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g1540 533 Gene3D Transferase(Phosphotransferase) domain 1 145 350 - -
Ssu7g1540 533 Pfam Protein kinase domain 75 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g1540 533 PANTHER RECEPTOR-LIKE KINASE LIP1 1 438 - -
Ssu7g1540 533 MobiDBLite consensus disorder prediction 357 377 - -
Ssu7g1540 533 SUPERFAMILY Protein kinase-like (PK-like) 49 344 IPR011009 -
Ssu7g1540 533 PANTHER OS07G0668900 PROTEIN 1 438 - -
Ssu7g1540 533 MobiDBLite consensus disorder prediction 387 408 - -
Ssu7g1540 533 MobiDBLite consensus disorder prediction 349 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1540 Ssu-Chr7 32440714 32443304 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1540 1 348 Glycoside Hydrolase AT3G07070 59.834 4.10e-153 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Ssu7g1540 Pkinase 2.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1540 - - gmx:100804526 658.292