Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1523 ATGGAGAGGAACCTGAACCTCATCGTCCCTAATCCTCAACCTCATGGAATTATTCCACGCCGCAATTCCCCTATCCCTCAagATTCAATGTGGATGATGAAATTGAGTTCTGGTGAAACAATGGATTCTGGACATTATCCGGAGCGTCCAGGGGAGCCAGATTGTTCATATTACATCAGAACAGGCCTTTGTAGATTTGGTGCAACATGTCGGTTTAATCATCCTCCGAACAGGACGCTGGCTATTGCCACGGCAAGGATGATAGGCGAGTTCCCAGAAAGAATAGGGCAGCCAGAATGTCAGTACTATCTGAAGACAGGAACTTGCAAATTTGGAGCCACATGCAAATTTCATCATCCTAAAGACCAGGCTGGGATTGCTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCACTCCGCTctAATGAGCCTGAATGCACTTATTATTTGAGAACAGGACAATGCAAATTTGGGAACACTTGCAAATTTCACCATCCTCAACCGAGTAATATGATGCTTTCATTACGAGGTTCCCCTGTTTTCCCTACCATCCATTCTCCAACTACGCCAGGGCAGCAGTCATATACTGGAGGAATTACAAATTGGTCTAGGGCATCATATATTCCTAGTCCTCGCTGGCAAGGTCCTTCAAGTTATGCACCCTTAATTCTGCCTCAGGGAGTGGTTTCAGTGCCTGGGTGGAGTGCATACAGTGGTCAAATGGGATCAATCTCTACTTCAGACAGTCCACAGCAAGCAATGAGAAATGGTCAAACATATGGAACTTCTCGCCAAGGTGAGCTAGCAAATGCAGGCTCATCAAATGGGGCATATTCTCAATTCCGTTCTGGCACCGTTCCTGTAGGATTTTATGCATTGCAGAGGGAGAACATATTTCCTGAGAGACCTGGTCAGCCTGAATGCCAATTCTACATGAAGACAGGAGATTGTAAGTATGGTGCAGTCTGTCGGTTCCACCACCCACGTGAGAGGCTAATTCCTGCTCCTGACTGTGTCTTGAGTCCCATAGGCCTTCCTTTACGTCCTGTGAGTTGGGTCCTTGCTATGGAGTTCTATCTACCTAGTTGGTTTTTCataggcttaaattttattgtttctgAATTTATACTTCATTATAGTTCTCACAGGTTGAGTTTGGTGAGGATTTGA 1170 0.4436 MERNLNLIVPNPQPHGIIPRRNSPIPQDSMWMMKLSSGETMDSGHYPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRTLAIATARMIGEFPERIGQPECQYYLKTGTCKFGATCKFHHPKDQAGIAGRVALNILGYPLRSNEPECTYYLRTGQCKFGNTCKFHHPQPSNMMLSLRGSPVFPTIHSPTTPGQQSYTGGITNWSRASYIPSPRWQGPSSYAPLILPQGVVSVPGWSAYSGQMGSISTSDSPQQAMRNGQTYGTSRQGELANAGSSNGAYSQFRSGTVPVGFYALQRENIFPERPGQPECQFYMKTGDCKYGAVCRFHHPRERLIPAPDCVLSPIGLPLRPVSWVLAMEFYLPSWFFIGLNFIVSEFILHYSSHRLSLVRI 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1523 389 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 97 121 IPR000571 GO:0046872
Ssu7g1523 389 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 143 167 IPR000571 GO:0046872
Ssu7g1523 389 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 51 76 IPR000571 GO:0046872
Ssu7g1523 389 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 304 329 IPR000571 GO:0046872
Ssu7g1523 389 Gene3D - 47 125 - -
Ssu7g1523 389 Gene3D - 292 338 - -
Ssu7g1523 389 SUPERFAMILY CCCH zinc finger 143 168 IPR036855 GO:0046872
Ssu7g1523 389 ProSiteProfiles Zinc finger C3H1-type profile. 94 122 IPR000571 GO:0046872
Ssu7g1523 389 PANTHER PROTEIN PHOSPHATASE RELATED 24 350 - -
Ssu7g1523 389 MobiDBLite consensus disorder prediction 242 275 - -
Ssu7g1523 389 Gene3D - 126 175 - -
Ssu7g1523 389 ProSiteProfiles Zinc finger C3H1-type profile. 140 168 IPR000571 GO:0046872
Ssu7g1523 389 SUPERFAMILY CCCH zinc finger 306 332 IPR036855 GO:0046872
Ssu7g1523 389 ProSiteProfiles Zinc finger C3H1-type profile. 302 330 IPR000571 GO:0046872
Ssu7g1523 389 MobiDBLite consensus disorder prediction 1 22 - -
Ssu7g1523 389 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 24 350 - -
Ssu7g1523 389 ProSiteProfiles Zinc finger C3H1-type profile. 49 77 IPR000571 GO:0046872
Ssu7g1523 389 SUPERFAMILY CCCH zinc finger 98 123 IPR036855 GO:0046872
Ssu7g1523 389 SUPERFAMILY CCCH zinc finger 54 77 IPR036855 GO:0046872
Ssu7g1523 389 SMART c3hfinal6 140 167 IPR000571 GO:0046872
Ssu7g1523 389 SMART c3hfinal6 94 121 IPR000571 GO:0046872
Ssu7g1523 389 SMART c3hfinal6 49 76 IPR000571 GO:0046872
Ssu7g1523 389 SMART c3hfinal6 302 329 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1523 Ssu-Chr7 32137112 32141014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1523 47 93 C2H2 Transcription Factor Family AT3G02830 44.681 5.63e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu7g1523 zf-CCCH 4e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1523 - - ccaj:109816515 694.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1523 7 32137112 32141014 Ssu7g1523 7 32137112 32141014 ECH